Ss1.1-Mixn-0027b17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCAGTGCTTTGCCCTTTGGGATGTGATCATCGCTGAGCTGACCAACAGGACCCAGAAGT TCCTGGAGAAGGCCAAGGCCTTGAAGATCAGTGGTGTGATCGGGCCTTACCGGGAGACTG TGGACTCAGTGGAGAAGAAAGTCAACGAGATCAGAGACATCCTGGCCCAGAGCCCGGCCG CAGAGCCGCTGAAGAACATCGGGAATCTCTTTGAGGAAGCGGAGAAACTGACCAAAGATG TTACAGAAAAGATGGCTCAAGTAGAAGGAAAATTATCTGACGCAGCTTTGCAAAGCAACA GCACAGCAAGAGAACTGGATTCTCTACAGGCAGAAGCTGAAAGCCTAGAAAACACAGTGA AAGAGCTTGCTGAACAACTGGAATTTATCAAAAACTCAGATATTCGGGGCGCCTTGGACA GCATTACCAAGTATTTCCAGATGTCTCTGGAGGCAGAGGAGAGGGTGAATGCTTCCACCA CGGATTCCAACAGCACTGTGGAGCAGTCGGCCCTCATTCGAGACAGAGTGGAAGACTTGA TGTTGGAGCAAGAGTCCCAGTTCAGGGACAAACAGGAGGAGCAGGCCCGCCTTCTGGATG AACTGGCAGGCAAACTACAGAGTCTGGACCTTTCAACTGCTGCTGAGCTGACGTGTGGAA CGCCTCCAGGGGCCTCCTGTTCCGAGACAGAGTGTGGCGGCCCAAACTGCAGAACTGACG AAGGACAGAAGAAGTGTGGGGGGCCTGGCTGTGGTGGGCTGGTCACCGTCGCACACAGCG CCTGGCAGAAAGCCATGGACTTTGACCAAGATGTCCTGAGTGCCTTGGCTGAGGTGGAAC AGCTCTCCAAGATGGTCTCTGAAGCAAAACTGAGAGCAGATGAAGCAAAACAGAATGCTC AAGATGTTCTGTTGAAAGCCAATGCTACCAAAGAAAAAGTGGACAAGAGCAATGAGGACT TGAGAAATCTGATCAAGCAAATCAGGGACTTTTTGACCCAGGACAGTGCTGATCTGGACA GTATTGAAGCAGTTGCTAACGAAGTATTGAAAATGGAAATGCCTAGCACCCCACAGCAGT TACAGAACTTGACAGAAGATATTCGTGAACGAGTTGAAAGCCTTTCTCAAGTAGAGGTTA TTCTACAGCAAAGTGCTGCTGACATTGCCAGAGCTGAGCTGCTGTTAGAAGAAGCTCAAA GAGCCAGCAAAAGTGCGACAGATGTTAAAGTCACTGCAGACATGGTAAAGGAAGCTCTGG AAGAAGCAGAAAAGGCCCAGATTGCCGCAGAAAAGGCCATTAAACAGGCAGATGAAGACA TCCAAGGAACCCAAAACCTGCTAACATCGATTGAATCTGAAACAGCAGCTTCTGAGGAAA CCTTGTTTAACGCCTCCCAACGCATCAGCGAGCTAGAGAGGAATGTGGAAGAACTTAAGC GGAAGGCTGCCCAAAACTCTGGGGAGGCAGAATATATTGAAAAAGTAGTATATGCTGTGA AACAAAGTGCAGATGATGTTAAGAAGACTCTGGATGGTGAACTTGAGGAAAAGTATAAGA AAGTAGAAAATTTAATAGCCCAAAAAACAGAAGAGTCAGCTGATGCCAGAAGGAAAGCTG AAATGCTACAAAACGAAGCAAAAACACTTCTGGCTCAAGCAAACAGCAAGCTGCAACTCC TGAAAGATTTAGAAAGAAAATATGAGGACAATCAAAAATATTTAGAAGATAAAGCTCAAG AATTAGTAAGATTGGAAGGAGAAGTCCGTTCACTCCTAAAGGATATAAGCCAGAAAGTTG CTGTTTACAGCACCTGCTTGTAACAAAGGAGGAGAGGCTGTAAGTAAGACAGCTGAGGTG ACCAAAGCAAAAAATCACTACATTTTAAAAACTGACTTAATGATCTTGAAAATAAAACTC ATTATCTATTTAATGTTTTTAATCACAACCTTTTGTATGGAGTTAAATAAAGTACAGTGC TTTTATATAAACAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCAGTGCTTTGCCCTTTGGGATGTGATCATCGCTGAGCTGACCAACAGGACCCAGAAGT TCCTGGAGAAGGCCAAGGCCTTGAAGATCAGTGGTGTGATCGGGCCTTACCGGGAGACTG TGGACTCAGTGGAGAAGAAAGTCAACGAGATCAGAGACATCCTGGCCCAGAGCCCGGCCG CAGAGCCGCTGAAGAACATCGGGAATCTCTTTGAGGAAGCGGAGAAACTGACCAAAGATG TTACAGAAAAGATGGCTCAAGTAGAAGGAAAATTATCTGACGCAGCTTTGCAAAGCAACA GCACAGCAAGAGAACTGGATTCTCTACAGGCAGAAGCTGAAAGCCTAGAAAACACAGTGA AAGAGCTTGCTGAACAACTGGAATTTATCAAAAACTCAGATATTCGGGGCGCCTTGGACA GCATTACCAAGTATTTCCAGATGTCTCTGGAGGCAGAGGAGAGGGTGAATGCTTCCACCA CGGATTCCAACAGCACTGTGGAGCAGTCGGCCCTCATTCGAGACAGAGTGGAAGACTTGA TGTTGGAGCAAGAGTCCCAGTTCAGGGACAAACAGGAGGAGCAGGCCCGCCTTCTGGATG AACTGGCAGGCAAACTACAGAGTCTGGACCTTTCAACTGCTGCTGAGCTGACGTGTGGAA CGCCTCCAGGGGCCTCCTGTTCCGAGACAGAGTGTGGCGGCCCAAACTGCAGAACTGACG AAGGACAGAAGAAGTGTGGGGGGCCTGGCTGTGGTGGGCTGGTCACCGTCGCACACAGCG CCTGGCAGAAAGCCATGGACTTTGACCAAGATGTCCTGAGTGCCTTGGCTGAGGTGGAAC AGCTCTCCAAGATGGTCTCTGAAGCAAAACTGAGAGCAGATGAAGCAAAACAGAATGCTC AAGATGTTCTGTTGAAAGCCAATGCTACCAAAGAAAAAGTGGACAAGAGCAATGAGGACT TGAGAAATCTGATCAAGCAAATCAGGGACTTTTTGACCCAGGACAGTGCTGATCTGGACA GTATTGAAGCAGTTGCTAACGAAGTATTGAAAATGGAAATGCCTAGCACCCCACAGCAGT TACAGAACTTGACAGAAGATATTCGTGAACGAGTTGAAAGCCTTTCTCAAGTAGAGGTTA TTCTACAGCAAAGTGCTGCTGACATTGCCAGAGCTGAGCTGCTGTTAGAAGAAGCTCAAA GAGCCAGCAAAAGTGCGACAGATGTTAAAGTCACTGCAGACATGGTAAAGGAAGCTCTGG AAGAAGCAGAAAAGGCCCAGATTGCCGCAGAAAAGGCCATTAAACAGGCAGATGAAGACA TCCAAGGAACCCAAAACCTGCTAACATCGATTGAATCTGAAACAGCAGCTTCTGAGGAAA CCTTGTTTAACGCCTCCCAACGCATCAGCGAGCTAGAGAGGAATGTGGAAGAACTTAAGC GGAAGGCTGCCCAAAACTCTGGGGAGGCAGAATATATTGAAAAAGTAGTATATGCTGTGA AACAAAGTGCAGATGATGTTAAGAAGACTCTGGATGGTGAACTTGAGGAAAAGTATAAGA AAGTAGAAAATTTAATAGCCCAAAAAACAGAAGAGTCAGCTGATGCCAGAAGGAAAGCTG AAATGCTACAAAACGAAGCAAAAACACTTCTGGCTCAAGCAAACAGCAAGCTGCAACTCC TGAAAGATTTAGAAAGAAAATATGAGGACAATCAAAAATATTTAGAAGATAAAGCTCAAG AATTAGTAAGATTGGAAGGAGAAGTCCGTTCACTCCTAAAGGATATAAGCCAGAAAGTTG CTGTTTACAGCACCTGCTTGTAACAAAGGAGGAGAGGCTGTAAGTAAGACAGCTGAGGTG ACCAAAGCAAAAAATCACTACATTTTAAAAACTGACTTAATGATCTTGAAAATAAAACTC ATTATCTATTTAATGTTTTTAATCACAACCTTTTGTATGGAGTTAAATAAAGTACAGTGC TTTTATATAAACAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-199, + strand, RNAz p=0.702233 | |
| 1388-1526, + strand, RNAz p=0.866773 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-199, + strand, RNAz p=0.702233 | |
| 1388-1526, + strand, RNAz p=0.866773 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-227, gnl|bosTau2|chr4 (20165970-20166196) | |
| 1-227, gnl|Hg17|chr7 (107174607-107174381) | |
| 1-227, gnl|Mm7|chr12 (29158957-29159183) | |
| 408-646, gnl|bosTau2|chr4 (20169702-20169940) | |
| 408-646, gnl|Hg17|chr7 (107170053-107169815) | |
| 408-646, gnl|Mm7|chr12 (29161443-29161681) | |
| 647-856, gnl|bosTau2|chr4 (20172494-20172703) | |
| 647-856, gnl|canFam2|chr18 (15677711-15677535) | |
| 647-856, gnl|danRer3|chr4 (21884215-21884411) | |
| 647-856, gnl|echTel1|scaffold_320415 (79733-79548) | |
| 647-856, gnl|fr1|chrUn (264949267-264949450) | |
| 647-856, gnl|galGal2|chr1 (8814322-8814153) | |
| 647-856, gnl|hg17|chr7 (107166535-107166732) | |
| 647-856, gnl|Hg17|chr7 (107166777-107166568) | |
| 647-856, gnl|mm7|chr12 (29164246-29164051) | |
| 647-856, gnl|Mm7|chr12 (29164004-29164213) | |
| 647-856, gnl|monDom2|scaffold_22 (44603503-44603317) | |
| 647-856, gnl|oryCun1|scaffold_212465 (101361-101161) | |
| 647-856, gnl|panTro1|chr6 (109082813-109083010) | |
| 647-856, gnl|rheMac2|chr3 (145341561-145341758) | |
| 647-856, gnl|rn3|chr6 (49180645-49180450) | |
| 647-856, gnl|tetNig1|chr13 (11444028-11444193) | |
| 647-856, gnl|xenTro1|scaffold_452 (840576-840747) | |
| 991-1207, gnl|bosTau2|chr4 (20176036-20176252) | |
| 991-1207, gnl|canFam2|chr18 (15680976-15680749) | |
| 991-1207, gnl|danRer3|chr23 (22042187-22041963) | |
| 991-1207, gnl|dasNov1|scaffold_1020 (32707-32934) | |
| 991-1207, gnl|echTel1|scaffold_320415 (82428-82201) | |
| 991-1207, gnl|fr1|chrUn (264948754-264948977) | |
| 991-1207, gnl|galGal2|chr1 (8815804-8815576) | |
| 991-1207, gnl|hg17|chr7 (107163803-107164030) | |
| 991-1207, gnl|Hg17|chr7 (107164024-107163808) | |
| 991-1207, gnl|loxAfr1|scaffold_40702 (15417-15644) | |
| 991-1207, gnl|mm7|chr12 (29166930-29166703) | |
| 991-1207, gnl|Mm7|chr12 (29166707-29166923) | |
| 991-1207, gnl|monDom2|scaffold_22 (44608549-44608322) | |
| 991-1207, gnl|oryCun1|scaffold_212465 (104102-103875) | |
| 991-1207, gnl|panTro1|chr6 (109080076-109080303) | |
| 991-1207, gnl|rheMac2|chr3 (145338840-145339067) | |
| 991-1207, gnl|rn3|chr6 (49183209-49182983) | |
| 991-1207, gnl|tetNig1|chr13 (11443500-11443724) | |
| 991-1207, gnl|xenTro1|scaffold_452 (838791-839017) | |
| 1349-1526, gnl|bosTau2|chr4 (20179039-20179216) | |
| 1349-1526, gnl|canFam2|chr18 (15684103-15683913) | |
| 1349-1526, gnl|danRer3|chr23 (22279771-22279585) | |
| 1349-1526, gnl|dasNov1|scaffold_1020 (29489-29684) | |
| 1349-1526, gnl|echTel1|scaffold_320415 (85603-85413) | |
| 1349-1526, gnl|fr1|chrUn (264948260-264948450) | |
| 1349-1526, gnl|galGal2|chr1 (8817107-8816918) | |
| 1349-1526, gnl|hg17|chr7 (107160574-107160764) | |
| 1349-1526, gnl|Hg17|chr7 (107160756-107160579) | |
| 1349-1526, gnl|mm7|chr12 (29168374-29168184) | |
| 1349-1526, gnl|Mm7|chr12 (29168190-29168367) | |
| 1349-1526, gnl|monDom2|scaffold_22 (44611058-44610872) | |
| 1349-1526, gnl|oryCun1|scaffold_212465 (106548-106358) | |
| 1349-1526, gnl|panTro1|chr6 (109076853-109077043) | |
| 1349-1526, gnl|rheMac2|chr3 (145335998-145336188) | |
| 1349-1526, gnl|rn3|chr6 (49184630-49184440) | |
| 1349-1526, gnl|xenTro1|scaffold_452 (837338-837527) | |
| 1685-1991, gnl|bosTau2|chr4 (20181102-20181406) | |
| 1685-1991, gnl|Hg17|chr7 (107158485-107158195) | |
| 1685-1991, gnl|Mm7|chr12 (29169901-29170188) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-227, gnl|bosTau2|chr4 (20165970-20166196) | |
| 1-227, gnl|Hg17|chr7 (107174607-107174381) | |
| 1-227, gnl|Mm7|chr12 (29158957-29159183) | |
| 408-646, gnl|bosTau2|chr4 (20169702-20169940) | |
| 408-646, gnl|Hg17|chr7 (107170053-107169815) | |
| 408-646, gnl|Mm7|chr12 (29161443-29161681) | |
| 647-856, gnl|bosTau2|chr4 (20172494-20172703) | |
| 647-856, gnl|canFam2|chr18 (15677711-15677535) | |
| 647-856, gnl|danRer3|chr4 (21884215-21884411) | |
| 647-856, gnl|echTel1|scaffold_320415 (79733-79548) | |
| 647-856, gnl|fr1|chrUn (264949267-264949450) | |
| 647-856, gnl|galGal2|chr1 (8814322-8814153) | |
| 647-856, gnl|hg17|chr7 (107166535-107166732) | |
| 647-856, gnl|Hg17|chr7 (107166777-107166568) | |
| 647-856, gnl|mm7|chr12 (29164246-29164051) | |
| 647-856, gnl|Mm7|chr12 (29164004-29164213) | |
| 647-856, gnl|monDom2|scaffold_22 (44603503-44603317) | |
| 647-856, gnl|oryCun1|scaffold_212465 (101361-101161) | |
| 647-856, gnl|panTro1|chr6 (109082813-109083010) | |
| 647-856, gnl|rheMac2|chr3 (145341561-145341758) | |
| 647-856, gnl|rn3|chr6 (49180645-49180450) | |
| 647-856, gnl|tetNig1|chr13 (11444028-11444193) | |
| 647-856, gnl|xenTro1|scaffold_452 (840576-840747) | |
| 991-1207, gnl|bosTau2|chr4 (20176036-20176252) | |
| 991-1207, gnl|canFam2|chr18 (15680976-15680749) | |
| 991-1207, gnl|danRer3|chr23 (22042187-22041963) | |
| 991-1207, gnl|dasNov1|scaffold_1020 (32707-32934) | |
| 991-1207, gnl|echTel1|scaffold_320415 (82428-82201) | |
| 991-1207, gnl|fr1|chrUn (264948754-264948977) | |
| 991-1207, gnl|galGal2|chr1 (8815804-8815576) | |
| 991-1207, gnl|hg17|chr7 (107163803-107164030) | |
| 991-1207, gnl|Hg17|chr7 (107164024-107163808) | |
| 991-1207, gnl|loxAfr1|scaffold_40702 (15417-15644) | |
| 991-1207, gnl|mm7|chr12 (29166930-29166703) | |
| 991-1207, gnl|Mm7|chr12 (29166707-29166923) | |
| 991-1207, gnl|monDom2|scaffold_22 (44608549-44608322) | |
| 991-1207, gnl|oryCun1|scaffold_212465 (104102-103875) | |
| 991-1207, gnl|panTro1|chr6 (109080076-109080303) | |
| 991-1207, gnl|rheMac2|chr3 (145338840-145339067) | |
| 991-1207, gnl|rn3|chr6 (49183209-49182983) | |
| 991-1207, gnl|tetNig1|chr13 (11443500-11443724) | |
| 991-1207, gnl|xenTro1|scaffold_452 (838791-839017) | |
| 1349-1526, gnl|bosTau2|chr4 (20179039-20179216) | |
| 1349-1526, gnl|canFam2|chr18 (15684103-15683913) | |
| 1349-1526, gnl|danRer3|chr23 (22279771-22279585) | |
| 1349-1526, gnl|dasNov1|scaffold_1020 (29489-29684) | |
| 1349-1526, gnl|echTel1|scaffold_320415 (85603-85413) | |
| 1349-1526, gnl|fr1|chrUn (264948260-264948450) | |
| 1349-1526, gnl|galGal2|chr1 (8817107-8816918) | |
| 1349-1526, gnl|hg17|chr7 (107160574-107160764) | |
| 1349-1526, gnl|Hg17|chr7 (107160756-107160579) | |
| 1349-1526, gnl|mm7|chr12 (29168374-29168184) | |
| 1349-1526, gnl|Mm7|chr12 (29168190-29168367) | |
| 1349-1526, gnl|monDom2|scaffold_22 (44611058-44610872) | |
| 1349-1526, gnl|oryCun1|scaffold_212465 (106548-106358) | |
| 1349-1526, gnl|panTro1|chr6 (109076853-109077043) | |
| 1349-1526, gnl|rheMac2|chr3 (145335998-145336188) | |
| 1349-1526, gnl|rn3|chr6 (49184630-49184440) | |
| 1349-1526, gnl|xenTro1|scaffold_452 (837338-837527) | |
| 1685-1991, gnl|bosTau2|chr4 (20181102-20181406) | |
| 1685-1991, gnl|Hg17|chr7 (107158485-107158195) | |
| 1685-1991, gnl|Mm7|chr12 (29169901-29170188) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| elu (0.770713) | |
| ski (0.586941) | |
| pro (0.512033) | |
| sug (0.509165) | |
| bla (0.497389) | |
| fco (0.471624) | |
| fat (0.442282) | |
| amn (0.417711) | |
| aor (0.390549) | |
| sin (0.349895) | |
| rec (0.346141) | |
| cte (0.29274) | |
| liv (0.292569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| tra (0.123092) | |
| eru (0.120048) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| ski (0.586941) | |
| pro (0.512033) | |
| sug (0.509165) | |
| bla (0.497389) | |
| fco (0.471624) | |
| fat (0.442282) | |
| amn (0.417711) | |
| aor (0.390549) | |
| sin (0.349895) | |
| rec (0.346141) | |
| cte (0.29274) | |
| liv (0.292569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| tra (0.123092) | |
| eru (0.120048) |