Non-Coding RNA Search

Ss1.1-Mixn-0027b18.5

Sequence:


               
               TCATTTACCCAAATAGTGATTTACTTTGGGAGATCCTTGCCAATTTTATTTTCTGTATGA
TGAAGTAAGATTGTGGACTTGATCCAGAGCTGAATAGTAGGGGGAAGCCACAGCATTTCC
TTTTAACTCAGTTCAGTTTTCATAGCAGGACTGAGCAGTTTTAAATTCTTTCTGTGCATG
CATACCTCATCAGTGATTGTACATACCTTGCCCACTCCTAGAGACAGCTGTGCTCACCTC
TTCCTGCTTTGTGCCTTGACTAAGGCTATTGACCCTAAATTTCTGAAGCACAGCCAAGAT
AAATTACATTCCTTATTTGTCAGTGTAAATTACCTTGATTGTGTGTACATTTTTACTGTA
ATTGAGACATTTTTTGTGTGTGACTAGTTGATTTTGCAGGATGTGCCATATCATTGAATG
GAACTAAAGTCTGTGACAGTGGACATAGCTGCTGGACCATTCCATCTTATATGTAAAAAA
ATCTGGAATTATGATTTTAAAACAATAACAACATGGTTATGATTTTCTTAGCATTTTCTT
TGTAAAGAACTAAAATATAAACTAGTTGGTGTATAATAAAAAGTAATAAAATTCAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTTACCCAAATAGTGATTTACTTTGGGAGATCCTTGCCAATTTTATTTTCTGTATGA
TGAAGTAAGATTGTGGACTTGATCCAGAGCTGAATAGTAGGGGGAAGCCACAGCATTTCC
TTTTAACTCAGTTCAGTTTTCATAGCAGGACTGAGCAGTTTTAAATTCTTTCTGTGCATG
CATACCTCATCAGTGATTGTACATACCTTGCCCACTCCTAGAGACAGCTGTGCTCACCTC
TTCCTGCTTTGTGCCTTGACTAAGGCTATTGACCCTAAATTTCTGAAGCACAGCCAAGAT
AAATTACATTCCTTATTTGTCAGTGTAAATTACCTTGATTGTGTGTACATTTTTACTGTA
ATTGAGACATTTTTTGTGTGTGACTAGTTGATTTTGCAGGATGTGCCATATCATTGAATG
GAACTAAAGTCTGTGACAGTGGACATAGCTGCTGGACCATTCCATCTTATATGTAAAAAA
ATCTGGAATTATGATTTTAAAACAATAACAACATGGTTATGATTTTCTTAGCATTTTCTT
TGTAAAGAACTAAAATATAAACTAGTTGGTGTATAATAAAAAGTAATAAAATTCAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-357, - strand, RNAz p=0.519932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-357, - strand, RNAz p=0.519932

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr20 (4280751-4280151)
               

               
               1-600, gnl|Hg17|chr5 (61717376-61717970)
               

               
               1-600, gnl|Mm7|chr13 (104091305-104090738)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr20 (4280751-4280151)
               

               
               1-600, gnl|Hg17|chr5 (61717376-61717970)
               

               
               1-600, gnl|Mm7|chr13 (104091305-104090738)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eye (0.170503)
               

               
               mga (0.160205)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-600, gnl\|bosTau2\|chr20 (4280751-4280151)
	1-600, gnl\|Hg17\|chr5 (61717376-61717970)
	1-600, gnl\|Mm7\|chr13 (104091305-104090738)

	eye (0.170503)
	mga (0.160205)
	bla (0.124347)
	cly (0.120642)
	spc (0.113366)
	cty (0.10408)