Non-Coding RNA Search

Ss1.1-Mixn-0027b20.5

Sequence:


               
               GAGCTGACGAGGTGGCGGCAGCAGCGACGATGGCAGGGAAGGAGTTGGAGCGGTGCCAGC
GGCAGGCGGATGAGGTGACGGAAATCATGCTCAACAACTTCGACAAGGTCCTGGAGCGCG
ACGGGAAGCTGGCGGAACTGGAGCAGCGTTCAGACCAACTCCTGGACATGAGCTCTGCCT
TCAGCAAGACAACCAAGACCCTGGCCCAGAAGAAGCGCTGGGAGAACCTCCGGTGCCGGA
TCTACTTGGGGCTGGCCGTGGGCGGTGGCCTGCTCATACTCCTGATTGTGCTGTTGGCCG
TCTTTCTCCCACAGAGTAGCAAGGACAGCAGTGCTCCACCCGCCCAGAACGCGGGCTCTG
CCTCAGGGACTGGGGACTGACCCAGCTGGGCCTGGAAATGAGGCCGAATAGTTGCATTGG
CCGCTTCTGGTCTTCAGCGGACCATGGCGTTTGTGCCCATCTGATCCACCCCAGTGAGTG
CAGAAGGGCAGTCCCTGACGTGTACACCTTTGTTGTCGCCTCTCGCATCACAGACTGGCT
CTTGAGGGCAACCTGCTGCCCTAGCCATGCCAGGCCAGCTCCACCCGGAACTTAGTAAAA
GCTGCTATTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGACGAGGTGGCGGCAGCAGCGACGATGGCAGGGAAGGAGTTGGAGCGGTGCCAGC
GGCAGGCGGATGAGGTGACGGAAATCATGCTCAACAACTTCGACAAGGTCCTGGAGCGCG
ACGGGAAGCTGGCGGAACTGGAGCAGCGTTCAGACCAACTCCTGGACATGAGCTCTGCCT
TCAGCAAGACAACCAAGACCCTGGCCCAGAAGAAGCGCTGGGAGAACCTCCGGTGCCGGA
TCTACTTGGGGCTGGCCGTGGGCGGTGGCCTGCTCATACTCCTGATTGTGCTGTTGGCCG
TCTTTCTCCCACAGAGTAGCAAGGACAGCAGTGCTCCACCCGCCCAGAACGCGGGCTCTG
CCTCAGGGACTGGGGACTGACCCAGCTGGGCCTGGAAATGAGGCCGAATAGTTGCATTGG
CCGCTTCTGGTCTTCAGCGGACCATGGCGTTTGTGCCCATCTGATCCACCCCAGTGAGTG
CAGAAGGGCAGTCCCTGACGTGTACACCTTTGTTGTCGCCTCTCGCATCACAGACTGGCT
CTTGAGGGCAACCTGCTGCCCTAGCCATGCCAGGCCAGCTCCACCCGGAACTTAGTAAAA
GCTGCTATTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q791P0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q791P0_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               329-448, - strand, RNAz p=0.783803
               

               
               489-611, - strand, RNAz p=0.794901

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-448, - strand, RNAz p=0.783803
               

               
               489-611, - strand, RNAz p=0.794901

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               170-611, gnl|bosTau2|chr11 (36408868-36408429)
               

               
               170-611, gnl|Hg17|chr2 (85731728-85732167)
               

               
               170-611, gnl|Mm7|chr6 (72387402-72386967)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-611, gnl|bosTau2|chr11 (36408868-36408429)
               

               
               170-611, gnl|Hg17|chr2 (85731728-85732167)
               

               
               170-611, gnl|Mm7|chr6 (72387402-72386967)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nje (0.33184)
               

               
               pty (0.285429)
               

               
               nms (0.213858)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               pty (0.285429)
               

               
               nms (0.213858)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	329-448, - strand, RNAz p=0.783803
	489-611, - strand, RNAz p=0.794901

	170-611, gnl\|bosTau2\|chr11 (36408868-36408429)
	170-611, gnl\|Hg17\|chr2 (85731728-85732167)
	170-611, gnl\|Mm7\|chr6 (72387402-72386967)

	nje (0.33184)
	pty (0.285429)
	nms (0.213858)
	csp (0.161186)
	nca (0.136874)
	che (0.136314)
	ssp (0.13552)
	cov (0.132153)
	jca (0.11396)
	nbm (0.0993246)