Non-Coding RNA Search

Ss1.1-Mixn-0027c24.5

Sequence:


               
               GTAGCCCTTAAGAGACCTGGAGTGTACGCCTGTAGTACTCCATCCTTACAGTTGCCGGCA
GTAGCTCTTTGTGGCTGTGCGCGAGCTTGCTATTGCCTTGAAGGCGGGCGAACCTGTACC
CTGGGAAGGAGGAAGCCTCAGAAGCTGACAGCTATCCTCAGCAGGAAGAAGAAGCAGGAA
AGAAATCTCAAGATGGAAAATTTTCCTAAGGAAAACAAAGGAAAGGAGCAGGCTCAAATG
CGGAATGAAGAAGCCCACCCTTTTGGAGGTGGTGAAGGCCAGAGGCCTGGGGAAAACGTT
CCAGGGGACTGGGTTCCACCTGCCCAGGATTTTAGAGAGGATTTGCCCAATAGGCTTGTC
AATAACATTGACATGATAGATGGAGATGCAGATGATATGGAAAGGTTCATGGAGGAGATG
AGAGAGCTGAGGAGGAAAATTAGGGAGCTTCAGTTGAGGTACAGTCTGCGCATTCTTATT
GGAGATCTTCCTCACCATGACCATCATGATGAGTTTTGCCTTATGCCTTGAATGCTGAGG
TTAATAATCATAACCCCCCTGCTTCCCAAAATTGCATTTTCTTGATGTACCTTTTACTAC
GAACCTTTGGTGTTCTGTCATTTTTCTGATTGGAGATTTTGTTTTTACTTTTGACTTAGT
CTGTAAGTTTTTCTGTCAGCGGGGGAGATTGATCAACTTGCATGGGAAGATGTCTATTCC
ATATGGTAAAGCTAATAAAGCAGGTTAAAAAGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGCCCTTAAGAGACCTGGAGTGTACGCCTGTAGTACTCCATCCTTACAGTTGCCGGCA
GTAGCTCTTTGTGGCTGTGCGCGAGCTTGCTATTGCCTTGAAGGCGGGCGAACCTGTACC
CTGGGAAGGAGGAAGCCTCAGAAGCTGACAGCTATCCTCAGCAGGAAGAAGAAGCAGGAA
AGAAATCTCAAGATGGAAAATTTTCCTAAGGAAAACAAAGGAAAGGAGCAGGCTCAAATG
CGGAATGAAGAAGCCCACCCTTTTGGAGGTGGTGAAGGCCAGAGGCCTGGGGAAAACGTT
CCAGGGGACTGGGTTCCACCTGCCCAGGATTTTAGAGAGGATTTGCCCAATAGGCTTGTC
AATAACATTGACATGATAGATGGAGATGCAGATGATATGGAAAGGTTCATGGAGGAGATG
AGAGAGCTGAGGAGGAAAATTAGGGAGCTTCAGTTGAGGTACAGTCTGCGCATTCTTATT
GGAGATCTTCCTCACCATGACCATCATGATGAGTTTTGCCTTATGCCTTGAATGCTGAGG
TTAATAATCATAACCCCCCTGCTTCCCAAAATTGCATTTTCTTGATGTACCTTTTACTAC
GAACCTTTGGTGTTCTGTCATTTTTCTGATTGGAGATTTTGTTTTTACTTTTGACTTAGT
CTGTAAGTTTTTCTGTCAGCGGGGGAGATTGATCAACTTGCATGGGAAGATGTCTATTCC
ATATGGTAAAGCTAATAAAGCAGGTTAAAAAGCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57112275|ref|XP_538115.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57112275|ref|XP_538115.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               192-391, - strand, RNAz p=0.996141

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-391, - strand, RNAz p=0.996141

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               163-754, gnl|bosTau2|chrX (15255699-15256300)
               

               
               163-754, gnl|Hg17|chrX (101215421-101214829)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-754, gnl|bosTau2|chrX (15255699-15256300)
               

               
               163-754, gnl|Hg17|chrX (101215421-101214829)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.35545)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               ecc (0.115035)

	163-754, gnl\|bosTau2\|chrX (15255699-15256300)
	163-754, gnl\|Hg17\|chrX (101215421-101214829)