Non-Coding RNA Search

Ss1.1-Mixn-0027d05.5

Sequence:


               
               GTGGACGGCAACAGCGGCGGCAGGATACAGCGGGAGCGAGATGGCCAGCAGGGCGGCGGC
AGGGCTCCTCCTGTGTGGGGTTGCCCTGGTCTTCCTGGTGCTGCTGCAGGGCACACAGTC
CGTCTACATCCAGTACCAAGGCTTCCGGGTCCAGCTGAAATCAGTGAAGAAGCTGAGCGA
CCTGGAGGGACAGTGGGCGCCCAGCCCCCGCCTGCAAGCGCAGAGCCCCCAGCCCTCCGT
GTGCCACCACTCGGCCCTGCCACCGGACCTCCAGCCCATCTGCCAGTCTGAGGAGGCGGC
CAGCATCTTCCAGGCCTTGAGGACCATCGCTGGCGACGACTGTGAGCTGTGTGTGAATGT
TGCCTGTACCGGCTGCAGCTGAGAGGACCCCGGGCGCCCCGAGCCCACCCTGGACCCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGACGGCAACAGCGGCGGCAGGATACAGCGGGAGCGAGATGGCCAGCAGGGCGGCGGC
AGGGCTCCTCCTGTGTGGGGTTGCCCTGGTCTTCCTGGTGCTGCTGCAGGGCACACAGTC
CGTCTACATCCAGTACCAAGGCTTCCGGGTCCAGCTGAAATCAGTGAAGAAGCTGAGCGA
CCTGGAGGGACAGTGGGCGCCCAGCCCCCGCCTGCAAGCGCAGAGCCCCCAGCCCTCCGT
GTGCCACCACTCGGCCCTGCCACCGGACCTCCAGCCCATCTGCCAGTCTGAGGAGGCGGC
CAGCATCTTCCAGGCCTTGAGGACCATCGCTGGCGACGACTGTGAGCTGTGTGTGAATGT
TGCCTGTACCGGCTGCAGCTGAGAGGACCCCGGGCGCCCCGAGCCCACCCTGGACCCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               GUC2B_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               GUC2B_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-226, - strand, RNAz p=0.633699

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-226, - strand, RNAz p=0.633699

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               119-321, gnl|bosTau2|chr4 (30930740-30930538)
               

               
               119-321, gnl|canFam2|chr15 (4097091-4096463)
               

               
               119-321, gnl|dasNov1|scaffold_36871 (7284-6590)
               

               
               119-321, gnl|echTel1|scaffold_294271 (5752-6433)
               

               
               119-321, gnl|hg17|chr1 (42289300-42289960)
               

               
               119-321, gnl|Hg17|chr1 (42289418-42289631)
               

               
               119-321, gnl|loxAfr1|scaffold_84169 (5734-4977)
               

               
               119-321, gnl|mm7|chr4 (119034296-119033643)
               

               
               119-321, gnl|Mm7|chr4 (119034171-119033967)
               

               
               119-321, gnl|oryCun1|scaffold_204145 (7859-8406)
               

               
               119-321, gnl|panTro1|chr1 (43258439-43259099)
               

               
               119-321, gnl|rheMac2|chr1 (45055201-45055859)
               

               
               119-321, gnl|rn3|chr5 (140243568-140242947)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-321, gnl|bosTau2|chr4 (30930740-30930538)
               

               
               119-321, gnl|canFam2|chr15 (4097091-4096463)
               

               
               119-321, gnl|dasNov1|scaffold_36871 (7284-6590)
               

               
               119-321, gnl|echTel1|scaffold_294271 (5752-6433)
               

               
               119-321, gnl|hg17|chr1 (42289300-42289960)
               

               
               119-321, gnl|Hg17|chr1 (42289418-42289631)
               

               
               119-321, gnl|loxAfr1|scaffold_84169 (5734-4977)
               

               
               119-321, gnl|mm7|chr4 (119034296-119033643)
               

               
               119-321, gnl|Mm7|chr4 (119034171-119033967)
               

               
               119-321, gnl|oryCun1|scaffold_204145 (7859-8406)
               

               
               119-321, gnl|panTro1|chr1 (43258439-43259099)
               

               
               119-321, gnl|rheMac2|chr1 (45055201-45055859)
               

               
               119-321, gnl|rn3|chr5 (140243568-140242947)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               jej (0.593531)
               

               
               col (0.585023)
               

               
               nje (0.49776)
               

               
               nco (0.161734)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.593531)
               

               
               col (0.585023)
               

               
               nje (0.49776)
               

               
               nco (0.161734)

	119-321, gnl\|bosTau2\|chr4 (30930740-30930538)
	119-321, gnl\|canFam2\|chr15 (4097091-4096463)
	119-321, gnl\|dasNov1\|scaffold_36871 (7284-6590)
	119-321, gnl\|echTel1\|scaffold_294271 (5752-6433)
	119-321, gnl\|hg17\|chr1 (42289300-42289960)
	119-321, gnl\|Hg17\|chr1 (42289418-42289631)
	119-321, gnl\|loxAfr1\|scaffold_84169 (5734-4977)
	119-321, gnl\|mm7\|chr4 (119034296-119033643)
	119-321, gnl\|Mm7\|chr4 (119034171-119033967)
	119-321, gnl\|oryCun1\|scaffold_204145 (7859-8406)
	119-321, gnl\|panTro1\|chr1 (43258439-43259099)
	119-321, gnl\|rheMac2\|chr1 (45055201-45055859)
	119-321, gnl\|rn3\|chr5 (140243568-140242947)