Non-Coding RNA Search

Ss1.1-Mixn-0027d21.5

Sequence:


               
               GGAACGACCCTTGGAGCCCGCTTCTATCGGCAGATCAAGAGACATCCCGGGCTCATCCCG
ATGATTGGCTTCATTGGCCTGGGCATGGGCAGCGCTGCGCTCTACTTGCTGCGACTCGCC
CTACGCAGCCCCGACGTCTGCTGGGACAGAAAGAACAACCCAGAGCCCTGGAACCGCCTG
AGCCCCAACGACCAATACAAGTTCCTTGCAGTTTCCACTGACTATAAGAAGCTGAAGAAG
GACCGGCCAGACTTCTAAGCCTGGCTGCAGTGCAAGTCGATGTAAACCACCACCAGCCAG
TCTACTCATTTCTTCCACTCCCCACTCCCAACCCCAGAGCGCCACTCCAGCCACCCTGTC
CAACCTCTGCTTACACAGGCCGGGTTCCCACGAGGAGGGGAGTAGCTCCACCCCCCTCCT
CTTCCCCTGTTCCCAGCACCGGAAGGGCCTCTGACCCTCAGCTGAGTCTCAGGAGGGGGA
GGGGGAGTTCGGAGGGCAGGCAGCAGCCTAGTCGACCCAAAAGTCCCATGCCAGCCAGTC
CCCGCTACCCGGGCCTCACAGGGTGTGGTACATGCTACGTGTTGAGCGTGGCCTACGTGA
GAGCCGCGAGCAAGTGGGGGCCTGAGTGCCAAATGACGTGGCAGGCCCCACATTAGCCCA
GGCTCTGGGTGCCAGCCCAGGGGCGGTGCTGCCCTGGCTTGCTGGTTGTTGACAGCCCCG
CCAGCTTGGGATGAGACACCCAGGAAGGTACGGCTCCCTCCTCCCAGTGCCCCAGCCCAC
TGCCTCCCATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACGACCCTTGGAGCCCGCTTCTATCGGCAGATCAAGAGACATCCCGGGCTCATCCCG
ATGATTGGCTTCATTGGCCTGGGCATGGGCAGCGCTGCGCTCTACTTGCTGCGACTCGCC
CTACGCAGCCCCGACGTCTGCTGGGACAGAAAGAACAACCCAGAGCCCTGGAACCGCCTG
AGCCCCAACGACCAATACAAGTTCCTTGCAGTTTCCACTGACTATAAGAAGCTGAAGAAG
GACCGGCCAGACTTCTAAGCCTGGCTGCAGTGCAAGTCGATGTAAACCACCACCAGCCAG
TCTACTCATTTCTTCCACTCCCCACTCCCAACCCCAGAGCGCCACTCCAGCCACCCTGTC
CAACCTCTGCTTACACAGGCCGGGTTCCCACGAGGAGGGGAGTAGCTCCACCCCCCTCCT
CTTCCCCTGTTCCCAGCACCGGAAGGGCCTCTGACCCTCAGCTGAGTCTCAGGAGGGGGA
GGGGGAGTTCGGAGGGCAGGCAGCAGCCTAGTCGACCCAAAAGTCCCATGCCAGCCAGTC
CCCGCTACCCGGGCCTCACAGGGTGTGGTACATGCTACGTGTTGAGCGTGGCCTACGTGA
GAGCCGCGAGCAAGTGGGGGCCTGAGTGCCAAATGACGTGGCAGGCCCCACATTAGCCCA
GGCTCTGGGTGCCAGCCCAGGGGCGGTGCTGCCCTGGCTTGCTGGTTGTTGACAGCCCCG
CCAGCTTGGGATGAGACACCCAGGAAGGTACGGCTCCCTCCTCCCAGTGCCCCAGCCCAC
TGCCTCCCATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IAH9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IAH9_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-435, - strand, RNAz p=0.861446
               

               
               597-705, + strand, RNAz p=0.806323

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-435, - strand, RNAz p=0.861446
               

               
               597-705, + strand, RNAz p=0.806323

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020142, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020142, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               200-705, gnl|bosTau2|chr5 (32453978-32454484)
               

               
               200-705, gnl|Hg17|chr12 (55915671-55915170)
               

               
               200-705, gnl|Mm7|chr10 (127017830-127018311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-705, gnl|bosTau2|chr5 (32453978-32454484)
               

               
               200-705, gnl|Hg17|chr12 (55915671-55915170)
               

               
               200-705, gnl|Mm7|chr10 (127017830-127018311)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               pla (0.133672)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               pla (0.133672)

	200-435, - strand, RNAz p=0.861446
	597-705, + strand, RNAz p=0.806323

	200-705, gnl\|bosTau2\|chr5 (32453978-32454484)
	200-705, gnl\|Hg17\|chr12 (55915671-55915170)
	200-705, gnl\|Mm7\|chr10 (127017830-127018311)

	nlu (0.383362)
	nep (0.36785)
	cga (0.279096)
	nca (0.273748)
	pla (0.133672)