Non-Coding RNA Search

Ss1.1-Mixn-0027e02.5

Sequence:


               
               CAAGAAAGCTAAGTCTTCAAATTAACAATTTCTGTGGCGGAAGTGTCTTGGCATTGCCCT
TGAATTCCAAAAAATCTGATCCAGTCACAACAAAGTCACAAAAGAAAAATAGGAACAAGC
CAACAAACACTGGAGATATTGAAAAGTATTTGTCACCTAAATCTCAACTTGGGTCAGCAT
CACAGTCTGAAGTTGTACAAGAAGATAGGAAAAACTCCGTGTCTAAGGAAACTGACAGCA
GTGGTATGAAGAGCCCTACATGGCAAGACACAGACATTGAGGAAGATATGCCAACACTTT
CTCCACAGATATGCCCTGAAGTTCAAGAGCAAGGTGTAAAACCTTCAATGGAGTCACCTA
TGCCTCAGTTATATGCCAGTGGTAGAGAATGGTGCCTTGAAGGACAAATGGAAACAAAAG
CAAGCAATCATGAGAAAGAGTTATGTGTCATAAATCATGAGGGACCTAAAGCCAGAGTTC
CCGACTCTGAAGAAGCTGCAGTTAAAACTTGTGGCAAAACAGAGAGTGGGTTCACTGTCT
CTGATACGACACCGATAATTAGAAATAACACACCGGAGATAGAAAATGAAGAGTCTAACC
TACTGATCAATAAGGATATCTTCAAAAGGAAAAATCAGGAATCTTTGTTTGAAGCAGTCA
GGGACCCATGCTCTTCTGCAAAAAGAAGAAAAATGTTCCCCACAGCTTCCTCAGATGAAG
AGGAAACAGAAATCAGCTTTACTCAAAAACTGATAGATTTGGAACATCTACTTTTTGAGA
GACATAAACAAGAAGAACAGGACCGGTTGTTAGCATTACAGCTTCAAAAAGAGGTGGATC
AAGAGCACATGAGGCCAAACAGGCAAAGAGGATCCCCAGATGGCTATCAGTTACGTGCTA
CGTCCTCACCTCCAGACAGATTGCTAAATGGACAGAGGAGGAGTTCCAAAGATAGGAACT
TCAAAAGACAAACTGATCTAGAGCATCCAAAACCTCAGAGAGGCTCAAAAAATGAAAATT
GGCAAACTTCTTTTAAGATCCAGTGGAAACATTCAGTTAACGGAAGAAATATACCAAATT
CTATTAGAGATAATTGTAGTGTACCTAAAACTGCTCAGTCCCTACAGCCGAGTAAGTCCC
AGAAAAGTATTTTTCAGATGTTTCAGAGATACACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAAAGCTAAGTCTTCAAATTAACAATTTCTGTGGCGGAAGTGTCTTGGCATTGCCCT
TGAATTCCAAAAAATCTGATCCAGTCACAACAAAGTCACAAAAGAAAAATAGGAACAAGC
CAACAAACACTGGAGATATTGAAAAGTATTTGTCACCTAAATCTCAACTTGGGTCAGCAT
CACAGTCTGAAGTTGTACAAGAAGATAGGAAAAACTCCGTGTCTAAGGAAACTGACAGCA
GTGGTATGAAGAGCCCTACATGGCAAGACACAGACATTGAGGAAGATATGCCAACACTTT
CTCCACAGATATGCCCTGAAGTTCAAGAGCAAGGTGTAAAACCTTCAATGGAGTCACCTA
TGCCTCAGTTATATGCCAGTGGTAGAGAATGGTGCCTTGAAGGACAAATGGAAACAAAAG
CAAGCAATCATGAGAAAGAGTTATGTGTCATAAATCATGAGGGACCTAAAGCCAGAGTTC
CCGACTCTGAAGAAGCTGCAGTTAAAACTTGTGGCAAAACAGAGAGTGGGTTCACTGTCT
CTGATACGACACCGATAATTAGAAATAACACACCGGAGATAGAAAATGAAGAGTCTAACC
TACTGATCAATAAGGATATCTTCAAAAGGAAAAATCAGGAATCTTTGTTTGAAGCAGTCA
GGGACCCATGCTCTTCTGCAAAAAGAAGAAAAATGTTCCCCACAGCTTCCTCAGATGAAG
AGGAAACAGAAATCAGCTTTACTCAAAAACTGATAGATTTGGAACATCTACTTTTTGAGA
GACATAAACAAGAAGAACAGGACCGGTTGTTAGCATTACAGCTTCAAAAAGAGGTGGATC
AAGAGCACATGAGGCCAAACAGGCAAAGAGGATCCCCAGATGGCTATCAGTTACGTGCTA
CGTCCTCACCTCCAGACAGATTGCTAAATGGACAGAGGAGGAGTTCCAAAGATAGGAACT
TCAAAAGACAAACTGATCTAGAGCATCCAAAACCTCAGAGAGGCTCAAAAAATGAAAATT
GGCAAACTTCTTTTAAGATCCAGTGGAAACATTCAGTTAACGGAAGAAATATACCAAATT
CTATTAGAGATAATTGTAGTGTACCTAAAACTGCTCAGTCCCTACAGCCGAGTAAGTCCC
AGAAAAGTATTTTTCAGATGTTTCAGAGATACACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57109724|ref|XP_545152.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57109724|ref|XP_545152.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               670-789, - strand, RNAz p=0.948539
               

               
               910-1026, - strand, RNAz p=0.97059

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               670-789, - strand, RNAz p=0.948539
               

               
               910-1026, - strand, RNAz p=0.97059

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               24-148, gnl|bosTau2|chr1 (43162396-43162272)
               

               
               24-148, gnl|Hg17|chr3 (197699072-197698948)
               

               
               24-148, gnl|Mm7|chr16 (31963644-31963768)
               


               
               233-1176, gnl|bosTau2|chr1 (43156960-43156014)
               

               
               233-1176, gnl|Hg17|chr3 (197687945-197687005)
               

               
               233-1176, gnl|Mm7|chr16 (31972921-31973854)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-148, gnl|bosTau2|chr1 (43162396-43162272)
               

               
               24-148, gnl|Hg17|chr3 (197699072-197698948)
               

               
               24-148, gnl|Mm7|chr16 (31963644-31963768)
               


               
               233-1176, gnl|bosTau2|chr1 (43156960-43156014)
               

               
               233-1176, gnl|Hg17|chr3 (197687945-197687005)
               

               
               233-1176, gnl|Mm7|chr16 (31972921-31973854)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	670-789, - strand, RNAz p=0.948539
	910-1026, - strand, RNAz p=0.97059

	24-148, gnl\|bosTau2\|chr1 (43162396-43162272)
	24-148, gnl\|Hg17\|chr3 (197699072-197698948)
	24-148, gnl\|Mm7\|chr16 (31963644-31963768)

	233-1176, gnl\|bosTau2\|chr1 (43156960-43156014)
	233-1176, gnl\|Hg17\|chr3 (197687945-197687005)
	233-1176, gnl\|Mm7\|chr16 (31972921-31973854)