Ss1.1-Mixn-0027e17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAATGGCTTCCCCGTCTTTGCCACTGTCATCCTAGCCAACCATGTGGCCAAGAAAGAT AACAAGGTCGCCGTGGGTGAGCTGACTGATGAGGACGTGAAGATGATCACCAGCCTCTCC AAGGACCAGCAGATCGGGGAGAAGATCTTTGCCAGCATCGCTCCTTCCATCTATGGGCAT GAAGACATCAAGCGGGGCCTAGCGCTGGCTCTGTTTGGAGGGGAGCCCAAGAACCCAGGT GGCAAGCACAAGGTGCGAGGCGACATCAACGTGCTCCTGTGTGGAGATCCTGGCACAGCC AAGTCTCAGTTCCTCAAGTACATCGAGAAGGTGTCCAGCCGAGCCATCTTCACCACTGGC CAGGGGGCCTCAGCCGTAGGCCTCACGGCGTATGTTCAGCGGCACCCTGTCAGCCGGGAG TGGACCCTGGAGGCCGGGGCCCTGGTGCTGGCAGACCGGGGAGTGTGTCTCATCGATGAA TTTGACAAGATGAACGACCAGGATAGGACCAGCATCCACGAGGCCATGGAGCAGCAGAGC ATTTCCATCTCCAAGGCCGGCATTGTCACCTCCCTGCAGGCGCGCTGTACCGTCATTGCT GCTGCCAACCCCATAGGCGGCCGCTATGACCCCTCGCTCACCTTCTCAGAAAATGTGGAC CTCACAGAGCCCATCATTTCCCGCTTTGATATCCTGTGTGTGGTGAGGGACACAGTGGAC CCAGTCCAGGATGAGATGCTGGCCCGTTTTGTGGTTGGCAGCCACGTCAGACACCACCCC AGCAACAAGGAGGATGGGGGGCTGGGCGGCACCCCAGAGCCCGCCATGCCCAACACGTAT GGCGTGGAGCCCCTGCCGCAGGAGGTCCTGAGGAAGTACATCATCTACGCCAAGGAGAAG GTCCACCCGAAGCTCAACCAGATGGACCAGGACAAGGTGGCCAAGATGTACAGTGACCTG AGGAAAGAGTCCATGGCCACAGGCAGCATCCCCATCACAGTGCGGCACATTGAGTCCATG ATCCGCATGGCTGAGGCCCACGCGCGCATCCACCTGCGGGACTACGTGATGGAGGACGAT GTCAACATGGCCATCCGCGTGATGCTGGAGAGCTTCGTGGATACACAGAAGTTCAGCGTC ATGCGCAGTATGCGGAAGACCTTCGCCCGCTACCTGTCCTTCCGGCGGGACAACAATGAG CTATTGCTCTTCATCCTGAAGCAGCTGGTGGCTGAGCAGGTGGCTTATCAGCGCAGCCGC TTTGGGGCCCAGCAGGACACTATTGAAGTGCCCGAGAAGGACTTGGTGGACAAGGCTCGT CAGATCAACATCCACAATCTGTCTGCCTTTTACGACAGTGAGCTCTTCAGGATGAACAAG TTCAGCCATGATCTGAAGCGGAAGGTGATCCTTCAGCAGTTCTGAGCAACGGGGTTTTTG TGTGATGCTGGCAGGTCTGCTCAGGAAACCAAGCCAGTCCTAGAGGGAAGGTGGTGTGGC TGGCCTGCAGCTGCATGTTTCCTCACTCTCGAGTCCTGCTTGGTGATTTCATTTCCTCTG CTCTTGCCATCTGGGTTACCACCTTTCCCAGAGCTGCTTTTTCAGCTGCCCGCCAGTGGC CCACCACCAACCTCCTTCTGTGGGGTGGTGTGGCATGTGTTCAGGACACCCAGGGTCTGT TCTGGGAGATGGGGTTCATGAGGCAATCTTGGCATGATGTCTCTGTCCTGCTGCCTGTGC TGCCATTGCCTGAACGAAGAGCGAGGTCACTTTACTTGCTGTGTGTTCTGAACTGGGTCC TGCGGTTCTCTAGGCTTTCCTGAGTAGAGGCAGCATTTGGGTTCTTCACAGAGGGGACCC TGACTGGTCACATAGCCCTGCAACCTTGGCTTCTGCCAGAGGGAAGGTTGGTTGGGGTCA GGGATGATGACTCGTGGTGGGGGTGATCCCAGCAAGGCCCCTGTGTGGGGTAGTCTGTCC TCCTGCCTGGCCACTTCCCCATGCTCTTGTTTGTACATTCACTTCTCCTTCCTGTAGTTT TAGTTTTTAATAAAATGGAGTAAAATCTGAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAATGGCTTCCCCGTCTTTGCCACTGTCATCCTAGCCAACCATGTGGCCAAGAAAGAT AACAAGGTCGCCGTGGGTGAGCTGACTGATGAGGACGTGAAGATGATCACCAGCCTCTCC AAGGACCAGCAGATCGGGGAGAAGATCTTTGCCAGCATCGCTCCTTCCATCTATGGGCAT GAAGACATCAAGCGGGGCCTAGCGCTGGCTCTGTTTGGAGGGGAGCCCAAGAACCCAGGT GGCAAGCACAAGGTGCGAGGCGACATCAACGTGCTCCTGTGTGGAGATCCTGGCACAGCC AAGTCTCAGTTCCTCAAGTACATCGAGAAGGTGTCCAGCCGAGCCATCTTCACCACTGGC CAGGGGGCCTCAGCCGTAGGCCTCACGGCGTATGTTCAGCGGCACCCTGTCAGCCGGGAG TGGACCCTGGAGGCCGGGGCCCTGGTGCTGGCAGACCGGGGAGTGTGTCTCATCGATGAA TTTGACAAGATGAACGACCAGGATAGGACCAGCATCCACGAGGCCATGGAGCAGCAGAGC ATTTCCATCTCCAAGGCCGGCATTGTCACCTCCCTGCAGGCGCGCTGTACCGTCATTGCT GCTGCCAACCCCATAGGCGGCCGCTATGACCCCTCGCTCACCTTCTCAGAAAATGTGGAC CTCACAGAGCCCATCATTTCCCGCTTTGATATCCTGTGTGTGGTGAGGGACACAGTGGAC CCAGTCCAGGATGAGATGCTGGCCCGTTTTGTGGTTGGCAGCCACGTCAGACACCACCCC AGCAACAAGGAGGATGGGGGGCTGGGCGGCACCCCAGAGCCCGCCATGCCCAACACGTAT GGCGTGGAGCCCCTGCCGCAGGAGGTCCTGAGGAAGTACATCATCTACGCCAAGGAGAAG GTCCACCCGAAGCTCAACCAGATGGACCAGGACAAGGTGGCCAAGATGTACAGTGACCTG AGGAAAGAGTCCATGGCCACAGGCAGCATCCCCATCACAGTGCGGCACATTGAGTCCATG ATCCGCATGGCTGAGGCCCACGCGCGCATCCACCTGCGGGACTACGTGATGGAGGACGAT GTCAACATGGCCATCCGCGTGATGCTGGAGAGCTTCGTGGATACACAGAAGTTCAGCGTC ATGCGCAGTATGCGGAAGACCTTCGCCCGCTACCTGTCCTTCCGGCGGGACAACAATGAG CTATTGCTCTTCATCCTGAAGCAGCTGGTGGCTGAGCAGGTGGCTTATCAGCGCAGCCGC TTTGGGGCCCAGCAGGACACTATTGAAGTGCCCGAGAAGGACTTGGTGGACAAGGCTCGT CAGATCAACATCCACAATCTGTCTGCCTTTTACGACAGTGAGCTCTTCAGGATGAACAAG TTCAGCCATGATCTGAAGCGGAAGGTGATCCTTCAGCAGTTCTGAGCAACGGGGTTTTTG TGTGATGCTGGCAGGTCTGCTCAGGAAACCAAGCCAGTCCTAGAGGGAAGGTGGTGTGGC TGGCCTGCAGCTGCATGTTTCCTCACTCTCGAGTCCTGCTTGGTGATTTCATTTCCTCTG CTCTTGCCATCTGGGTTACCACCTTTCCCAGAGCTGCTTTTTCAGCTGCCCGCCAGTGGC CCACCACCAACCTCCTTCTGTGGGGTGGTGTGGCATGTGTTCAGGACACCCAGGGTCTGT TCTGGGAGATGGGGTTCATGAGGCAATCTTGGCATGATGTCTCTGTCCTGCTGCCTGTGC TGCCATTGCCTGAACGAAGAGCGAGGTCACTTTACTTGCTGTGTGTTCTGAACTGGGTCC TGCGGTTCTCTAGGCTTTCCTGAGTAGAGGCAGCATTTGGGTTCTTCACAGAGGGGACCC TGACTGGTCACATAGCCCTGCAACCTTGGCTTCTGCCAGAGGGAAGGTTGGTTGGGGTCA GGGATGATGACTCGTGGTGGGGGTGATCCCAGCAAGGCCCCTGTGTGGGGTAGTCTGTCC TCCTGCCTGGCCACTTCCCCATGCTCTTGTTTGTACATTCACTTCTCCTTCCTGTAGTTT TAGTTTTTAATAAAATGGAGTAAAATCTGAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 27-144, - strand, RNAz p=0.840908 | |
| 445-561, - strand, RNAz p=0.791975 | |
| 766-976, - strand, RNAz p=0.928749 | |
| 1210-1315, - strand, RNAz p=0.599669 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 27-144, - strand, RNAz p=0.840908 | |
| 445-561, - strand, RNAz p=0.791975 | |
| 766-976, - strand, RNAz p=0.928749 | |
| 1210-1315, - strand, RNAz p=0.599669 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 1-144, gnl|bosTau2|chr22 (47773275-47773132) | |
| 1-144, gnl|canFam2|chr20 (4694723-4694941) | |
| 1-144, gnl|danRer3|chr22 (4753236-4753035) | |
| 1-144, gnl|dasNov1|scaffold_36375 (11612-11390) | |
| 1-144, gnl|echTel1|scaffold_314962 (819-1024) | |
| 1-144, gnl|fr1|chrUn (224976179-224976380) | |
| 1-144, gnl|galGal2|chr12 (9766553-9766347) | |
| 1-144, gnl|hg17|chr3 (128810365-128810588) | |
| 1-144, gnl|Hg17|chr3 (128810421-128810564) | |
| 1-144, gnl|loxAfr1|scaffold_11519 (11921-12142) | |
| 1-144, gnl|mm7|chr6 (88964308-88964087) | |
| 1-144, gnl|Mm7|chr6 (88964250-88964107) | |
| 1-144, gnl|monDom2|scaffold_5 (46006394-46006602) | |
| 1-144, gnl|oryCun1|scaffold_206378 (14639-14418) | |
| 1-144, gnl|panTro1|chr2 (130686003-130686226) | |
| 1-144, gnl|rheMac2|chr11 (87234458-87234241) | |
| 1-144, gnl|rn3|chr4 (123227367-123227149) | |
| 1-144, gnl|tetNig1|chrUn_random (5797346-5797146) | |
| 1-144, gnl|xenTro1|scaffold_72 (590107-590312) | |
| 249-561, gnl|bosTau2|chr14 (9832316-9832004) | |
| 249-561, gnl|Hg17|chr8 (49045683-49045995) | |
| 249-561, gnl|Mm7|chr16 (15169247-15168936) | |
| 727-976, gnl|bosTau2|chr22 (47766463-47766214) | |
| 727-976, gnl|canFam2|chr20 (4704103-4704381) | |
| 727-976, gnl|danRer3|chr22 (4746817-4746564) | |
| 727-976, gnl|echTel1|scaffold_314962 (6817-7095) | |
| 727-976, gnl|fr1|chrUn (224977263-224977597) | |
| 727-976, gnl|galGal2|chr12 (9763621-9763366) | |
| 727-976, gnl|hg17|chr3 (128820552-128820830) | |
| 727-976, gnl|Hg17|chr3 (128820565-128820820) | |
| 727-976, gnl|loxAfr1|scaffold_5219 (19468-19189) | |
| 727-976, gnl|mm7|chr6 (88961206-88960933) | |
| 727-976, gnl|Mm7|chr6 (88961191-88960936) | |
| 727-976, gnl|monDom2|scaffold_5 (46011124-46011409) | |
| 727-976, gnl|oryCun1|scaffold_206378 (5931-5671) | |
| 727-976, gnl|panTro1|chr2 (130695895-130696173) | |
| 727-976, gnl|rheMac2|chr11 (87224620-87224342) | |
| 727-976, gnl|rn3|chr4 (123224338-123224065) | |
| 727-976, gnl|tetNig1|chrUn_random (5795348-5795012) | |
| 727-976, gnl|xenTro1|scaffold_72 (593845-594092) | |
| 1157-1315, gnl|bosTau2|chr22 (47764933-47764775) | |
| 1157-1315, gnl|canFam2|chr20 (4705853-4706027) | |
| 1157-1315, gnl|danRer3|chr22 (4744315-4744148) | |
| 1157-1315, gnl|dasNov1|scaffold_36375 (3708-3533) | |
| 1157-1315, gnl|echTel1|scaffold_314962 (8149-8324) | |
| 1157-1315, gnl|fr1|chrUn (224977974-224978097) | |
| 1157-1315, gnl|galGal2|chr12 (9761467-9761292) | |
| 1157-1315, gnl|hg17|chr3 (128822603-128822778) | |
| 1157-1315, gnl|Hg17|chr3 (128822612-128822770) | |
| 1157-1315, gnl|loxAfr1|scaffold_5219 (17802-17626) | |
| 1157-1315, gnl|mm7|chr6 (88959637-88959465) | |
| 1157-1315, gnl|Mm7|chr6 (88959626-88959468) | |
| 1157-1315, gnl|monDom2|scaffold_5 (46012583-46012757) | |
| 1157-1315, gnl|panTro1|chr2 (130697946-130698121) | |
| 1157-1315, gnl|rheMac2|chr11 (87222489-87222314) | |
| 1157-1315, gnl|rn3|chr4 (123223035-123222863) | |
| 1157-1315, gnl|tetNig1|chrUn_random (5794272-5794102) | |
| 1157-1315, gnl|xenTro1|scaffold_72 (595547-595716) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-144, gnl|bosTau2|chr22 (47773275-47773132) | |
| 1-144, gnl|canFam2|chr20 (4694723-4694941) | |
| 1-144, gnl|danRer3|chr22 (4753236-4753035) | |
| 1-144, gnl|dasNov1|scaffold_36375 (11612-11390) | |
| 1-144, gnl|echTel1|scaffold_314962 (819-1024) | |
| 1-144, gnl|fr1|chrUn (224976179-224976380) | |
| 1-144, gnl|galGal2|chr12 (9766553-9766347) | |
| 1-144, gnl|hg17|chr3 (128810365-128810588) | |
| 1-144, gnl|Hg17|chr3 (128810421-128810564) | |
| 1-144, gnl|loxAfr1|scaffold_11519 (11921-12142) | |
| 1-144, gnl|mm7|chr6 (88964308-88964087) | |
| 1-144, gnl|Mm7|chr6 (88964250-88964107) | |
| 1-144, gnl|monDom2|scaffold_5 (46006394-46006602) | |
| 1-144, gnl|oryCun1|scaffold_206378 (14639-14418) | |
| 1-144, gnl|panTro1|chr2 (130686003-130686226) | |
| 1-144, gnl|rheMac2|chr11 (87234458-87234241) | |
| 1-144, gnl|rn3|chr4 (123227367-123227149) | |
| 1-144, gnl|tetNig1|chrUn_random (5797346-5797146) | |
| 1-144, gnl|xenTro1|scaffold_72 (590107-590312) | |
| 249-561, gnl|bosTau2|chr14 (9832316-9832004) | |
| 249-561, gnl|Hg17|chr8 (49045683-49045995) | |
| 249-561, gnl|Mm7|chr16 (15169247-15168936) | |
| 727-976, gnl|bosTau2|chr22 (47766463-47766214) | |
| 727-976, gnl|canFam2|chr20 (4704103-4704381) | |
| 727-976, gnl|danRer3|chr22 (4746817-4746564) | |
| 727-976, gnl|echTel1|scaffold_314962 (6817-7095) | |
| 727-976, gnl|fr1|chrUn (224977263-224977597) | |
| 727-976, gnl|galGal2|chr12 (9763621-9763366) | |
| 727-976, gnl|hg17|chr3 (128820552-128820830) | |
| 727-976, gnl|Hg17|chr3 (128820565-128820820) | |
| 727-976, gnl|loxAfr1|scaffold_5219 (19468-19189) | |
| 727-976, gnl|mm7|chr6 (88961206-88960933) | |
| 727-976, gnl|Mm7|chr6 (88961191-88960936) | |
| 727-976, gnl|monDom2|scaffold_5 (46011124-46011409) | |
| 727-976, gnl|oryCun1|scaffold_206378 (5931-5671) | |
| 727-976, gnl|panTro1|chr2 (130695895-130696173) | |
| 727-976, gnl|rheMac2|chr11 (87224620-87224342) | |
| 727-976, gnl|rn3|chr4 (123224338-123224065) | |
| 727-976, gnl|tetNig1|chrUn_random (5795348-5795012) | |
| 727-976, gnl|xenTro1|scaffold_72 (593845-594092) | |
| 1157-1315, gnl|bosTau2|chr22 (47764933-47764775) | |
| 1157-1315, gnl|canFam2|chr20 (4705853-4706027) | |
| 1157-1315, gnl|danRer3|chr22 (4744315-4744148) | |
| 1157-1315, gnl|dasNov1|scaffold_36375 (3708-3533) | |
| 1157-1315, gnl|echTel1|scaffold_314962 (8149-8324) | |
| 1157-1315, gnl|fr1|chrUn (224977974-224978097) | |
| 1157-1315, gnl|galGal2|chr12 (9761467-9761292) | |
| 1157-1315, gnl|hg17|chr3 (128822603-128822778) | |
| 1157-1315, gnl|Hg17|chr3 (128822612-128822770) | |
| 1157-1315, gnl|loxAfr1|scaffold_5219 (17802-17626) | |
| 1157-1315, gnl|mm7|chr6 (88959637-88959465) | |
| 1157-1315, gnl|Mm7|chr6 (88959626-88959468) | |
| 1157-1315, gnl|monDom2|scaffold_5 (46012583-46012757) | |
| 1157-1315, gnl|panTro1|chr2 (130697946-130698121) | |
| 1157-1315, gnl|rheMac2|chr11 (87222489-87222314) | |
| 1157-1315, gnl|rn3|chr4 (123223035-123222863) | |
| 1157-1315, gnl|tetNig1|chrUn_random (5794272-5794102) | |
| 1157-1315, gnl|xenTro1|scaffold_72 (595547-595716) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| csp (0.322373) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| ese (0.126502) | |
| eru (0.120048) |