Non-Coding RNA Search

Ss1.1-Mixn-0027f11.5

Sequence:


               
               CAGTCTTCCAGATCTGGGCCAAACCATCCTGACAGTGGCCCCTGGGGCAGCTTCGCCCTG
TTCACCTGTCGTGTGGGCAGAGCCACTAGGAGCCCAGGAGCAGGAGGAGCAGCCTAGCCC
CCAGAAACCACCTCCATTTCTGAGCCTTCCAGAGCTTCAGCCTCTCTATAATCATCCTAC
CCCACAGAGACCACAGTCAGGGGTCAGGCCAGGCTCCGGGATTCCTGAGGACAGGGGCTT
CCAGCACTTACTGGTGGGGAACAGCCATGCAGTGGAGGGGGCAACCTGCTTGCCTGATAC
AGGATGGGGTCAAGGGACGGTGGGCAGGTCCTCACTCAGGAGGTGGGGGGTAGGCTGGCC
AGCCCCCAGGGCTTGTCTGCCAAGCTCCTCCTTCCCCACCCCACCACCTCCCCAAAGGCT
CTCAGAGCAGCAACTGTGGGTGTCAGTATTACCTGAGCCTAGGCCAAAGCCAGCCCAAGG
CTGGGGGAGGGGATGAGACTCCAGGTCAGAATGTGAGGTCTTGGTCTGTGATTTAAGGTG
TTGCATGTGGAATCTTGAACTGTATGTGTAGTTTCTAGTGGAGAAATCAAGGCTCTGATT
ATTTTGTTTTTAGTATGAAAACGTGATTTCTTTTCTGTTTGTAACTCATCATAGAAACAT
TGTGGTGGGAGGAGAGGGGATAGTCTGACTGCAAATGAGGGAAACACCAAAGATCTACAT
CATTAAAATGATGACATGCCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCTTCCAGATCTGGGCCAAACCATCCTGACAGTGGCCCCTGGGGCAGCTTCGCCCTG
TTCACCTGTCGTGTGGGCAGAGCCACTAGGAGCCCAGGAGCAGGAGGAGCAGCCTAGCCC
CCAGAAACCACCTCCATTTCTGAGCCTTCCAGAGCTTCAGCCTCTCTATAATCATCCTAC
CCCACAGAGACCACAGTCAGGGGTCAGGCCAGGCTCCGGGATTCCTGAGGACAGGGGCTT
CCAGCACTTACTGGTGGGGAACAGCCATGCAGTGGAGGGGGCAACCTGCTTGCCTGATAC
AGGATGGGGTCAAGGGACGGTGGGCAGGTCCTCACTCAGGAGGTGGGGGGTAGGCTGGCC
AGCCCCCAGGGCTTGTCTGCCAAGCTCCTCCTTCCCCACCCCACCACCTCCCCAAAGGCT
CTCAGAGCAGCAACTGTGGGTGTCAGTATTACCTGAGCCTAGGCCAAAGCCAGCCCAAGG
CTGGGGGAGGGGATGAGACTCCAGGTCAGAATGTGAGGTCTTGGTCTGTGATTTAAGGTG
TTGCATGTGGAATCTTGAACTGTATGTGTAGTTTCTAGTGGAGAAATCAAGGCTCTGATT
ATTTTGTTTTTAGTATGAAAACGTGATTTCTTTTCTGTTTGTAACTCATCATAGAAACAT
TGTGGTGGGAGGAGAGGGGATAGTCTGACTGCAAATGAGGGAAACACCAAAGATCTACAT
CATTAAAATGATGACATGCCCCTC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-159, - strand, RNAz p=0.624987
               

               
               439-558, - strand, RNAz p=0.543738
               

               
               626-744, + strand, RNAz p=0.809404

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.624987
               

               
               439-558, - strand, RNAz p=0.543738
               

               
               626-744, + strand, RNAz p=0.809404

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017749, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017749, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr15 (48237862-48237135)
               

               
               1-744, gnl|Hg17|chr11 (46375228-46374540)
               

               
               1-744, gnl|Mm7|chr2 (91768880-91769564)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr15 (48237862-48237135)
               

               
               1-744, gnl|Hg17|chr11 (46375228-46374540)
               

               
               1-744, gnl|Mm7|chr2 (91768880-91769564)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cov (0.264306)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	40-159, - strand, RNAz p=0.624987
	439-558, - strand, RNAz p=0.543738
	626-744, + strand, RNAz p=0.809404

	1-744, gnl\|bosTau2\|chr15 (48237862-48237135)
	1-744, gnl\|Hg17\|chr11 (46375228-46374540)
	1-744, gnl\|Mm7\|chr2 (91768880-91769564)