Ss1.1-Mixn-0027g14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTGTGGAGATGCTCAACCTAAAGCTTCACCGGCCAGCCTTCGGTGATGACATTGACC TCAATGCCACCTTTAATGTGGACACCCCTCCTTCCCAGCCCTCCAGCATCCAGCATGGCC GTGCCAAAAGACTCTTCCCAGAGGAAGCACATTCTCCCGTTCAGGATGTTCCCAAGAAGA TGCCTCAAGGCGCCAAGCAGGAGTCTCAGCTCTCGCTGGGTGGCCAGCGCTGTCTGGGAG AGCCTGATGAGGAGCTGGCCGATGCCTTCCCTGTTTTCATCCGGAATGCTGTCCTGGGCC AGAAACAGCCCAAGAGGGCCAGGGCAGAGCCCTGTCGCAGCACAGATGCAGTAAGGACAG GCTTTGATGGACTTGGAGGCCGGACGAAATTCATCCAGCCTACTGACACGACTATGATCC GCCCACTGCCCACGAAGCTCAAGCTCAAGGCTAGGGCAAAGCAGAGAGTGGCAGCCAGGA CAGTGCTCCCTCCCTCCCAGGCTAAGCTGGACAGTTTCCTGTCCTAGTGAAAACAGTGAG TCTGATCAGAGCCAGATACATACCTCTGACTTATAAGCCAAGGACTGGTGACTTGCTTGG CAGACAGCTTTTGGGGGCATGGCCTCTCTTCCAGGATGAGCCCTGGGGACAAAGATTAAA CAAGAACATGGGGTGAAGGTATAGCCCAGAAACTTTTCTTTTTCTTCACACATCCTGCCT CACCCCCCACCATCGTGGGCCAACCTGTGGGAGCTGATATGATCAGCTCATCATTCTTTT GAGCTTCTTGTTCCAGGCTCCTGTGTATAGCTATGATCAGATGTGACTGGGATGTTTCTG GTCCTCCAGCCCAAGGTCTTTTGTTGGCTTTAAGGACCAAAGTACTTGAAGCTTCTCAGG CAACTTCAGCCTGCCCAAGTTTCTGCCTGCCTCTAACTTGTTACTAGGCATGGCCTGGGC CAAGCAGGGTGGGAAATGAGGGATGTAGTGGGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTGTGGAGATGCTCAACCTAAAGCTTCACCGGCCAGCCTTCGGTGATGACATTGACC TCAATGCCACCTTTAATGTGGACACCCCTCCTTCCCAGCCCTCCAGCATCCAGCATGGCC GTGCCAAAAGACTCTTCCCAGAGGAAGCACATTCTCCCGTTCAGGATGTTCCCAAGAAGA TGCCTCAAGGCGCCAAGCAGGAGTCTCAGCTCTCGCTGGGTGGCCAGCGCTGTCTGGGAG AGCCTGATGAGGAGCTGGCCGATGCCTTCCCTGTTTTCATCCGGAATGCTGTCCTGGGCC AGAAACAGCCCAAGAGGGCCAGGGCAGAGCCCTGTCGCAGCACAGATGCAGTAAGGACAG GCTTTGATGGACTTGGAGGCCGGACGAAATTCATCCAGCCTACTGACACGACTATGATCC GCCCACTGCCCACGAAGCTCAAGCTCAAGGCTAGGGCAAAGCAGAGAGTGGCAGCCAGGA CAGTGCTCCCTCCCTCCCAGGCTAAGCTGGACAGTTTCCTGTCCTAGTGAAAACAGTGAG TCTGATCAGAGCCAGATACATACCTCTGACTTATAAGCCAAGGACTGGTGACTTGCTTGG CAGACAGCTTTTGGGGGCATGGCCTCTCTTCCAGGATGAGCCCTGGGGACAAAGATTAAA CAAGAACATGGGGTGAAGGTATAGCCCAGAAACTTTTCTTTTTCTTCACACATCCTGCCT CACCCCCCACCATCGTGGGCCAACCTGTGGGAGCTGATATGATCAGCTCATCATTCTTTT GAGCTTCTTGTTCCAGGCTCCTGTGTATAGCTATGATCAGATGTGACTGGGATGTTTCTG GTCCTCCAGCCCAAGGTCTTTTGTTGGCTTTAAGGACCAAAGTACTTGAAGCTTCTCAGG CAACTTCAGCCTGCCCAAGTTTCTGCCTGCCTCTAACTTGTTACTAGGCATGGCCTGGGC CAAGCAGGGTGGGAAATGAGGGATGTAGTGGGGAGA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 679-789, - strand, RNAz p=0.970005 | |
| 830-996, + strand, RNAz p=0.977437 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 679-789, - strand, RNAz p=0.970005 | |
| 830-996, + strand, RNAz p=0.977437 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_005879, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-151, gnl|bosTau2|chr22 (38162660-38162510) | |
| 1-151, gnl|Hg17|chr3 (49844500-49844353) | |
| 1-151, gnl|Mm7|chr9 (107700257-107700407) | |
| 197-355, gnl|bosTau2|chr22 (38161984-38161826) | |
| 197-355, gnl|canFam2|chr20 (42453238-42453351) | |
| 197-355, gnl|canFam2|chr20 (42453436-42453225) | |
| 197-355, gnl|dasNov1|scaffold_93901 (7254-7060) | |
| 197-355, gnl|dasNov1|scaffold_93901 (7097-7267) | |
| 197-355, gnl|echTel1|scaffold_309710 (90961-90791) | |
| 197-355, gnl|hg17|chr1 (25235560-25235675) | |
| 197-355, gnl|hg17|chr3 (49841978-49842176) | |
| 197-355, gnl|Hg17|chr3 (49842207-49842049) | |
| 197-355, gnl|loxAfr1|scaffold_16268 (11446-11559) | |
| 197-355, gnl|loxAfr1|scaffold_16268 (11632-11433) | |
| 197-355, gnl|mm7|chr2 (6049735-6049651) | |
| 197-355, gnl|mm7|chr9 (107702336-107702156) | |
| 197-355, gnl|Mm7|chr9 (107702123-107702281) | |
| 197-355, gnl|oryCun1|scaffold_191234 (49615-49502) | |
| 197-355, gnl|oryCun1|scaffold_191234 (49437-49628) | |
| 197-355, gnl|panTro1|chr1 (25637028-25637143) | |
| 197-355, gnl|panTro1|chr2 (51377362-51377560) | |
| 197-355, gnl|rheMac2|chr1 (27786155-27786270) | |
| 197-355, gnl|rheMac2|chr2 (86578152-86577954) | |
| 197-355, gnl|rn3|chr8 (113259092-113259298) | |
| 197-355, gnl|rn3|chr8 (113259263-113259079) | |
| 402-996, gnl|bosTau2|chr22 (38161467-38160872) | |
| 402-996, gnl|Hg17|chr3 (49841662-49841083) | |
| 402-996, gnl|Mm7|chr9 (107702632-107703141) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-151, gnl|bosTau2|chr22 (38162660-38162510) | |
| 1-151, gnl|Hg17|chr3 (49844500-49844353) | |
| 1-151, gnl|Mm7|chr9 (107700257-107700407) | |
| 197-355, gnl|bosTau2|chr22 (38161984-38161826) | |
| 197-355, gnl|canFam2|chr20 (42453238-42453351) | |
| 197-355, gnl|canFam2|chr20 (42453436-42453225) | |
| 197-355, gnl|dasNov1|scaffold_93901 (7254-7060) | |
| 197-355, gnl|dasNov1|scaffold_93901 (7097-7267) | |
| 197-355, gnl|echTel1|scaffold_309710 (90961-90791) | |
| 197-355, gnl|hg17|chr1 (25235560-25235675) | |
| 197-355, gnl|hg17|chr3 (49841978-49842176) | |
| 197-355, gnl|Hg17|chr3 (49842207-49842049) | |
| 197-355, gnl|loxAfr1|scaffold_16268 (11446-11559) | |
| 197-355, gnl|loxAfr1|scaffold_16268 (11632-11433) | |
| 197-355, gnl|mm7|chr2 (6049735-6049651) | |
| 197-355, gnl|mm7|chr9 (107702336-107702156) | |
| 197-355, gnl|Mm7|chr9 (107702123-107702281) | |
| 197-355, gnl|oryCun1|scaffold_191234 (49615-49502) | |
| 197-355, gnl|oryCun1|scaffold_191234 (49437-49628) | |
| 197-355, gnl|panTro1|chr1 (25637028-25637143) | |
| 197-355, gnl|panTro1|chr2 (51377362-51377560) | |
| 197-355, gnl|rheMac2|chr1 (27786155-27786270) | |
| 197-355, gnl|rheMac2|chr2 (86578152-86577954) | |
| 197-355, gnl|rn3|chr8 (113259092-113259298) | |
| 197-355, gnl|rn3|chr8 (113259263-113259079) | |
| 402-996, gnl|bosTau2|chr22 (38161467-38160872) | |
| 402-996, gnl|Hg17|chr3 (49841662-49841083) | |
| 402-996, gnl|Mm7|chr9 (107702632-107703141) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| lnt (0.142308) | |
| med (0.116252) |