Non-Coding RNA Search

Ss1.1-Mixn-0027h14.5

Sequence:


               
               GGGCCCGCCGCGCCGCCCTGGACACGGGCCCGACCCGGCTGCTGAGGGCTCAGAGGGCCC
GCGCTGTCTGTCTGTCTGTCTGTCTTCGCTGTCACGCCCGGGAGCCCAGGGGAACGGGCT
CTGCTGGGGCCCCTGGTGTGACGGGCGCATCTCTGCTGAGACCCGGCTCCCAAGGACACG
GTGGTGGCCGTACACCCCAGACCCCTTCCCGCCCCGTCGGAGGAGGAGGTTTTTAAAGGG
GAAACACACTCATTTTACTTTCCAAGCGACACAAAGCATTAGTCCGCAAAGGCTGCGGGC
GAAGCCAGCCTCCCCGGCGCCCTGGCTGCGGCGGGGGCTTCAGACCCAGCAGGGGATGGC
GGCTGCAGAGAAGCGGCAGCGCCCAGGCCTCTCGGCCGCCCTGTCTCCTCCCTCAGCAGG
AGCCCTGGTTGGGAAGGAGAGGCAGTTTGGCCGAGCAGCCGCCGCCCTGGGCCACACGCG
GGCTTCCCTCAAGTGCTGCTGCTCCGGGCCCCACACGCATCGCAGGGGCACAGGTGGAGG
GGCCGCCCCCCCGTCCCCCCGTCCCCTGTGTCTGCGACAGGGCGCCGAGCAGCCACGCCT
GAAACATAAGACACAGCCACAATGATGATATTCGAAAAGCATTTTTTCCATTTTCCTTGG
GAATCAGGATTATTCAGAGATAGAGGAGGAAGCCGGCTTAGCTAATTTTGCCACTAAGAG
GCCACTAACAGTGGGAGGTGGCCCCGCCTGAGCCCGGGGTGTCTCCCAGGGGGATGGCGC
AGGTGTGGACAGCCTGGGTGGGCGAGACAGGGCGGAGGCTGTGCCAGCTCCCAGGAGAAG
GTGTCTGGGGTGGCTTCCACCACGTTCTGGGGACGAACAGAAAGCACAGCCCCCCCACAC
ACACAACTGGTCAGCTCCGCAAGCGCTCCTGGCGGTGACTCTGGAACCTTCCAGAACCTG
AGCTCCACCCACAGACGCAGAGCTGACCACCCACAACCGACTCAAGGCGGCCCCAGTCCG
GCGTCTGAGCTCACGCGCGGTTCTGTTCCGTTCGTATTGAGACAGAACCTTCCCCTGGCC
AAGCACGAAGGCCCTGGCGGGGGCTCCCTCGCAGGCTGATGCGGAAATTCAATCATGACA
TGACCGAGGCTCGAGAGAGCGCCACCCAGCTTTCTTTATCTCTATTTATTTCACCGAAAC
GAGAACCGAAAGACTGACGAAAGAGGGAATTGTAGCGCGAGAGCGAGGACGATAAGCTTA
ATAAAAGACGAGGACGTGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCGCCGCGCCGCCCTGGACACGGGCCCGACCCGGCTGCTGAGGGCTCAGAGGGCCC
GCGCTGTCTGTCTGTCTGTCTGTCTTCGCTGTCACGCCCGGGAGCCCAGGGGAACGGGCT
CTGCTGGGGCCCCTGGTGTGACGGGCGCATCTCTGCTGAGACCCGGCTCCCAAGGACACG
GTGGTGGCCGTACACCCCAGACCCCTTCCCGCCCCGTCGGAGGAGGAGGTTTTTAAAGGG
GAAACACACTCATTTTACTTTCCAAGCGACACAAAGCATTAGTCCGCAAAGGCTGCGGGC
GAAGCCAGCCTCCCCGGCGCCCTGGCTGCGGCGGGGGCTTCAGACCCAGCAGGGGATGGC
GGCTGCAGAGAAGCGGCAGCGCCCAGGCCTCTCGGCCGCCCTGTCTCCTCCCTCAGCAGG
AGCCCTGGTTGGGAAGGAGAGGCAGTTTGGCCGAGCAGCCGCCGCCCTGGGCCACACGCG
GGCTTCCCTCAAGTGCTGCTGCTCCGGGCCCCACACGCATCGCAGGGGCACAGGTGGAGG
GGCCGCCCCCCCGTCCCCCCGTCCCCTGTGTCTGCGACAGGGCGCCGAGCAGCCACGCCT
GAAACATAAGACACAGCCACAATGATGATATTCGAAAAGCATTTTTTCCATTTTCCTTGG
GAATCAGGATTATTCAGAGATAGAGGAGGAAGCCGGCTTAGCTAATTTTGCCACTAAGAG
GCCACTAACAGTGGGAGGTGGCCCCGCCTGAGCCCGGGGTGTCTCCCAGGGGGATGGCGC
AGGTGTGGACAGCCTGGGTGGGCGAGACAGGGCGGAGGCTGTGCCAGCTCCCAGGAGAAG
GTGTCTGGGGTGGCTTCCACCACGTTCTGGGGACGAACAGAAAGCACAGCCCCCCCACAC
ACACAACTGGTCAGCTCCGCAAGCGCTCCTGGCGGTGACTCTGGAACCTTCCAGAACCTG
AGCTCCACCCACAGACGCAGAGCTGACCACCCACAACCGACTCAAGGCGGCCCCAGTCCG
GCGTCTGAGCTCACGCGCGGTTCTGTTCCGTTCGTATTGAGACAGAACCTTCCCCTGGCC
AAGCACGAAGGCCCTGGCGGGGGCTCCCTCGCAGGCTGATGCGGAAATTCAATCATGACA
TGACCGAGGCTCGAGAGAGCGCCACCCAGCTTTCTTTATCTCTATTTATTTCACCGAAAC
GAGAACCGAAAGACTGACGAAAGAGGGAATTGTAGCGCGAGAGCGAGGACGATAAGCTTA
ATAAAAGACGAGGACGTGCAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-339, gnl|bosTau2|chr19 (44732870-44733200)
               

               
               1-339, gnl|Hg17|chr17 (76552773-76553142)
               

               
               1-339, gnl|Mm7|chr11 (120006577-120006960)
               


               
               568-1268, gnl|bosTau2|chr19 (44733654-44734348)
               

               
               568-1268, gnl|Hg17|chr17 (76553831-76554757)
               

               
               568-1268, gnl|Mm7|chr11 (120007684-120008441)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-339, gnl|bosTau2|chr19 (44732870-44733200)
               

               
               1-339, gnl|Hg17|chr17 (76552773-76553142)
               

               
               1-339, gnl|Mm7|chr11 (120006577-120006960)
               


               
               568-1268, gnl|bosTau2|chr19 (44733654-44734348)
               

               
               568-1268, gnl|Hg17|chr17 (76553831-76554757)
               

               
               568-1268, gnl|Mm7|chr11 (120007684-120008441)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               eru (0.240096)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

	1-339, gnl\|bosTau2\|chr19 (44732870-44733200)
	1-339, gnl\|Hg17\|chr17 (76552773-76553142)
	1-339, gnl\|Mm7\|chr11 (120006577-120006960)

	568-1268, gnl\|bosTau2\|chr19 (44733654-44734348)
	568-1268, gnl\|Hg17\|chr17 (76553831-76554757)
	568-1268, gnl\|Mm7\|chr11 (120007684-120008441)

	eru (0.240096)
	ece (0.229305)
	fcc (0.197785)
	cmu (0.186393)
	fbs (0.175346)
	hyp (0.142837)
	pla (0.133672)
	cov (0.132153)
	ebs (0.118301)