Non-Coding RNA Search

Ss1.1-Mixn-0027h18.5

Sequence:


               
               GATTTCTACTGTTTACAAACAAAACTCAGCCTGTCTCGTCCCAGATCCCAGAGTGCTGAC
TGCATCTGATTTCGGCTGCACAAGCAGTGTTCGCTGTTGCCTTCCTGACGGTGGCCCAGC
TTTGAGCGCCTCCTCCTCCCCCCACCCCCCGTTTGTCTACACTCCCCCCCCCGAACCCCG
GCTCCCTGACCCCCCCCAACCCACCACCGACAGAGGAGCGAGGGCCGGAGCTTTCCCACT
GTCGACGTCACTCGCCTGCAGAAACCGTCCCTAAAGCTGTGCGTCGGGTCCTTTCCGGCC
TCTCATGAGCCGCTGGTGCTCCCGCTCTGCCTCTGCCTCTCTCAAGGCGGACCGGAAGCG
TCTAATTACAATTTCGTGGCCTGGGTTTTGTCGCATACCACAGATTGTCTATGTATGTGT
AACGCACACCTCTCCTGGTGCTACTTCATTCCTGCTGTTAGTAAGAAAATGACAAAAATA
TTCATGTATAGCCAATTGATTGTGACGTGCTTGTGGTCTGTGCTTGCTCAGAAACAAACG
AACGAACAAACCCACAGTTTTTCCAGTTATAAATAAATGCTAAAGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTCTACTGTTTACAAACAAAACTCAGCCTGTCTCGTCCCAGATCCCAGAGTGCTGAC
TGCATCTGATTTCGGCTGCACAAGCAGTGTTCGCTGTTGCCTTCCTGACGGTGGCCCAGC
TTTGAGCGCCTCCTCCTCCCCCCACCCCCCGTTTGTCTACACTCCCCCCCCCGAACCCCG
GCTCCCTGACCCCCCCCAACCCACCACCGACAGAGGAGCGAGGGCCGGAGCTTTCCCACT
GTCGACGTCACTCGCCTGCAGAAACCGTCCCTAAAGCTGTGCGTCGGGTCCTTTCCGGCC
TCTCATGAGCCGCTGGTGCTCCCGCTCTGCCTCTGCCTCTCTCAAGGCGGACCGGAAGCG
TCTAATTACAATTTCGTGGCCTGGGTTTTGTCGCATACCACAGATTGTCTATGTATGTGT
AACGCACACCTCTCCTGGTGCTACTTCATTCCTGCTGTTAGTAAGAAAATGACAAAAATA
TTCATGTATAGCCAATTGATTGTGACGTGCTTGTGGTCTGTGCTTGCTCAGAAACAAACG
AACGAACAAACCCACAGTTTTTCCAGTTATAAATAAATGCTAAAGACG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-122, + strand, RNAz p=0.695775

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-122, + strand, RNAz p=0.695775

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_207577, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_207577, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-122, gnl|bosTau2|chr15 (35254631-35254508)
               

               
               1-122, gnl|canFam2|chr21 (26009941-26009721)
               

               
               1-122, gnl|dasNov1|scaffold_14393 (38991-38791)
               

               
               1-122, gnl|galGal2|chrUn (42015431-42015646)
               

               
               1-122, gnl|hg17|chr11 (74991856-74992072)
               

               
               1-122, gnl|Hg17|chr11 (74992113-74991990)
               

               
               1-122, gnl|loxAfr1|scaffold_5240 (7768-7986)
               

               
               1-122, gnl|mm7|chr7 (95350834-95350633)
               

               
               1-122, gnl|Mm7|chr7 (95350590-95350708)
               

               
               1-122, gnl|monDom2|scaffold_74 (1002812-1002609)
               

               
               1-122, gnl|rheMac2|chr14 (73783858-73784074)
               

               
               1-122, gnl|rn3|chr1 (156720636-156720433)
               


               
               183-588, gnl|bosTau2|chr15 (35254476-35254083)
               

               
               183-588, gnl|Hg17|chr11 (74991958-74991560)
               

               
               183-588, gnl|Mm7|chr7 (95350732-95351141)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-122, gnl|bosTau2|chr15 (35254631-35254508)
               

               
               1-122, gnl|canFam2|chr21 (26009941-26009721)
               

               
               1-122, gnl|dasNov1|scaffold_14393 (38991-38791)
               

               
               1-122, gnl|galGal2|chrUn (42015431-42015646)
               

               
               1-122, gnl|hg17|chr11 (74991856-74992072)
               

               
               1-122, gnl|Hg17|chr11 (74992113-74991990)
               

               
               1-122, gnl|loxAfr1|scaffold_5240 (7768-7986)
               

               
               1-122, gnl|mm7|chr7 (95350834-95350633)
               

               
               1-122, gnl|Mm7|chr7 (95350590-95350708)
               

               
               1-122, gnl|monDom2|scaffold_74 (1002812-1002609)
               

               
               1-122, gnl|rheMac2|chr14 (73783858-73784074)
               

               
               1-122, gnl|rn3|chr1 (156720636-156720433)
               


               
               183-588, gnl|bosTau2|chr15 (35254476-35254083)
               

               
               183-588, gnl|Hg17|chr11 (74991958-74991560)
               

               
               183-588, gnl|Mm7|chr7 (95350732-95351141)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)

	1-122, gnl\|bosTau2\|chr15 (35254631-35254508)
	1-122, gnl\|canFam2\|chr21 (26009941-26009721)
	1-122, gnl\|dasNov1\|scaffold_14393 (38991-38791)
	1-122, gnl\|galGal2\|chrUn (42015431-42015646)
	1-122, gnl\|hg17\|chr11 (74991856-74992072)
	1-122, gnl\|Hg17\|chr11 (74992113-74991990)
	1-122, gnl\|loxAfr1\|scaffold_5240 (7768-7986)
	1-122, gnl\|mm7\|chr7 (95350834-95350633)
	1-122, gnl\|Mm7\|chr7 (95350590-95350708)
	1-122, gnl\|monDom2\|scaffold_74 (1002812-1002609)
	1-122, gnl\|rheMac2\|chr14 (73783858-73784074)
	1-122, gnl\|rn3\|chr1 (156720636-156720433)

	183-588, gnl\|bosTau2\|chr15 (35254476-35254083)
	183-588, gnl\|Hg17\|chr11 (74991958-74991560)
	183-588, gnl\|Mm7\|chr7 (95350732-95351141)