Non-Coding RNA Search

Ss1.1-Mixn-0027j16.5

Sequence:


               
               GCAGGTGCCTTCCCCAACCCCTGACCCCTCAGCTGTTGCTTCCACCTTGAGGCTGCCAGG
CACTCAGCCTTGTGTGCCCCTTTGCCCCTTCTCAAGGTCAGCACTAATCCTGACTCAGTG
CTGCTCTATGTGGCTTCTGTAGGCTCTGCTACCCCATCCCAGGGCTCAGGGAGCTCAGAC
TGTCCTCATGGGGGCTCTTGGGGACTGTGGGCACCCTTTGGAAGGTTATAGAATGTATGC
TCTGTTTGGGCCCCAGGTCCCTTCCGTCAAACGCTGATACTTTTCCTCCACGTCATGTCA
GAAAGCCTGCCCCAACTCAGCCTCTTTGAGGCCAGGCCTTTCAAAGACTTGATGTGGGCC
TCCAGGCGCCTGGGCCTCCCTTTACTTGGTGTCTGGATCTACAGAGGCCCCCTTCGGGTG
GCGCGGCGGGAGGAGGCAGCTCGGCCTGCACATCTTTCCGTCTGAGCCAAGGAGGTACGA
TGGAGGAGCCTGGGGGCCTGAGCTTTTGTTGCTGCTGCTGTTTTCAGGGGTTAAGGTAAA
GGGGTCCATTCTGAAATTCCACGCCTAGATGTCGGCTGCCTCTGCGGGCTCGGGAAGCAG
AGCGCCCTAACCCTCCCTCGGGTCTAGTCTCTCCAGTGGAAGTCCTTTAATTTGGATCGG
AGAGCAGGGCCCCACCCACACTGTGCCCTGGGAGCTTCAGGTCTTGGGGTGTAAAGGGCA
GGGCAGGAGGGGAAGGACTGAGCAAGGAGGCCCCTCTCCTCCCCTACACCTCCCCCGGCT
CCAGCCTCTCCTGGGGTGAGACGCAACACGGGGCTGGGACACTCGTATTTATGGACCGGA
GGCTGGGGGTGACTTCCCCACAGCTTGTGCCCGACGGAGCCCTCAGCTATCTGGCCGTAC
CTTAGAAATTATTTATTCAACAGAAGCCCCGGGCACTTGAGGAGGTGTGGCCTCGGTCAC
CTTGAAAAGCCCCCAGGGGCTCGCAGCCCTGGAAAATATTTTCGACTAGCTGCTTCAGCT
GGATGTACAAAGGAATAGGCGTTATTTTATTGCTGTAATATTGTATGATACTGTCACTGT
ACATTCCACGTTGTCACTTATTGTAAAGGTACTACGGTTTCATTAACAATAAACACTCGT
TAACAATGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGTGCCTTCCCCAACCCCTGACCCCTCAGCTGTTGCTTCCACCTTGAGGCTGCCAGG
CACTCAGCCTTGTGTGCCCCTTTGCCCCTTCTCAAGGTCAGCACTAATCCTGACTCAGTG
CTGCTCTATGTGGCTTCTGTAGGCTCTGCTACCCCATCCCAGGGCTCAGGGAGCTCAGAC
TGTCCTCATGGGGGCTCTTGGGGACTGTGGGCACCCTTTGGAAGGTTATAGAATGTATGC
TCTGTTTGGGCCCCAGGTCCCTTCCGTCAAACGCTGATACTTTTCCTCCACGTCATGTCA
GAAAGCCTGCCCCAACTCAGCCTCTTTGAGGCCAGGCCTTTCAAAGACTTGATGTGGGCC
TCCAGGCGCCTGGGCCTCCCTTTACTTGGTGTCTGGATCTACAGAGGCCCCCTTCGGGTG
GCGCGGCGGGAGGAGGCAGCTCGGCCTGCACATCTTTCCGTCTGAGCCAAGGAGGTACGA
TGGAGGAGCCTGGGGGCCTGAGCTTTTGTTGCTGCTGCTGTTTTCAGGGGTTAAGGTAAA
GGGGTCCATTCTGAAATTCCACGCCTAGATGTCGGCTGCCTCTGCGGGCTCGGGAAGCAG
AGCGCCCTAACCCTCCCTCGGGTCTAGTCTCTCCAGTGGAAGTCCTTTAATTTGGATCGG
AGAGCAGGGCCCCACCCACACTGTGCCCTGGGAGCTTCAGGTCTTGGGGTGTAAAGGGCA
GGGCAGGAGGGGAAGGACTGAGCAAGGAGGCCCCTCTCCTCCCCTACACCTCCCCCGGCT
CCAGCCTCTCCTGGGGTGAGACGCAACACGGGGCTGGGACACTCGTATTTATGGACCGGA
GGCTGGGGGTGACTTCCCCACAGCTTGTGCCCGACGGAGCCCTCAGCTATCTGGCCGTAC
CTTAGAAATTATTTATTCAACAGAAGCCCCGGGCACTTGAGGAGGTGTGGCCTCGGTCAC
CTTGAAAAGCCCCCAGGGGCTCGCAGCCCTGGAAAATATTTTCGACTAGCTGCTTCAGCT
GGATGTACAAAGGAATAGGCGTTATTTTATTGCTGTAATATTGTATGATACTGTCACTGT
ACATTCCACGTTGTCACTTATTGTAAAGGTACTACGGTTTCATTAACAATAAACACTCGT
TAACAATGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               112-266, + strand, RNAz p=0.987161
               

               
               601-716, - strand, RNAz p=0.729547
               

               
               894-1013, - strand, RNAz p=0.644812

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-266, + strand, RNAz p=0.987161
               

               
               601-716, - strand, RNAz p=0.729547
               

               
               894-1013, - strand, RNAz p=0.644812

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               941-1029, - strand, RNAmicro p=0.999974
               

               
               854-925, + strand, RNAmicro p=0.999176
               

               
               160-220, + strand, RNAmicro p=0.9863
               

               
               950-1008, + strand, RNAmicro p=0.979914

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               941-1029, - strand, RNAmicro p=0.999974
               

               
               854-925, + strand, RNAmicro p=0.999176
               

               
               160-220, + strand, RNAmicro p=0.9863
               

               
               950-1008, + strand, RNAmicro p=0.979914

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_145804, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_145804, +

Aligned organism(s): 24 entry(ies)

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Aligned organism(s): 24 entry(ies)

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               37-379, gnl|bosTau2|chr15 (39093260-39092931)
               

               
               37-379, gnl|Hg17|chr11 (34130271-34129921)
               


               
               444-576, gnl|bosTau2|chr15 (39092817-39092678)
               

               
               444-576, gnl|canFam2|chr18 (36670318-36670094)
               

               
               444-576, gnl|hg17|chr11 (34129555-34129782)
               

               
               444-576, gnl|Hg17|chr11 (34129808-34129637)
               

               
               444-576, gnl|loxAfr1|scaffold_29989 (53119-52920)
               

               
               444-576, gnl|mm7|chr2 (103568881-103568696)
               

               
               444-576, gnl|monDom2|scaffold_10 (80379852-80380075)
               

               
               444-576, gnl|oryCun1|scaffold_198377 (103157-103387)
               

               
               444-576, gnl|panTro1|chr9 (34515708-34515936)
               

               
               444-576, gnl|rheMac2|chr14 (37668890-37668672)
               

               
               444-576, gnl|rn3|chr3 (88908263-88908104)
               


               
               601-1149, gnl|bosTau2|chr15 (39092677-39092110)
               

               
               601-1149, gnl|canFam2|chr18 (36670751-36670376)
               

               
               601-1149, gnl|dasNov1|scaffold_112296 (2956-2581)
               

               
               601-1149, gnl|Hg17|chr11 (34129636-34129110)
               

               
               601-1149, gnl|hg17|chr7 (136170660-136171018)
               

               
               601-1149, gnl|loxAfr1|scaffold_29989 (53596-53197)
               

               
               601-1149, gnl|mm7|chr2 (103569196-103568931)
               

               
               601-1149, gnl|oryCun1|scaffold_198377 (102721-103093)
               

               
               601-1149, gnl|panTro1|chr6 (138890284-138890642)
               

               
               601-1149, gnl|rheMac2|chr3 (174538006-174538384)
               

               
               601-1149, gnl|rn3|chr3 (88908578-88908313)

Aligned organism(s): 24 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-379, gnl|bosTau2|chr15 (39093260-39092931)
               

               
               37-379, gnl|Hg17|chr11 (34130271-34129921)
               


               
               444-576, gnl|bosTau2|chr15 (39092817-39092678)
               

               
               444-576, gnl|canFam2|chr18 (36670318-36670094)
               

               
               444-576, gnl|hg17|chr11 (34129555-34129782)
               

               
               444-576, gnl|Hg17|chr11 (34129808-34129637)
               

               
               444-576, gnl|loxAfr1|scaffold_29989 (53119-52920)
               

               
               444-576, gnl|mm7|chr2 (103568881-103568696)
               

               
               444-576, gnl|monDom2|scaffold_10 (80379852-80380075)
               

               
               444-576, gnl|oryCun1|scaffold_198377 (103157-103387)
               

               
               444-576, gnl|panTro1|chr9 (34515708-34515936)
               

               
               444-576, gnl|rheMac2|chr14 (37668890-37668672)
               

               
               444-576, gnl|rn3|chr3 (88908263-88908104)
               


               
               601-1149, gnl|bosTau2|chr15 (39092677-39092110)
               

               
               601-1149, gnl|canFam2|chr18 (36670751-36670376)
               

               
               601-1149, gnl|dasNov1|scaffold_112296 (2956-2581)
               

               
               601-1149, gnl|Hg17|chr11 (34129636-34129110)
               

               
               601-1149, gnl|hg17|chr7 (136170660-136171018)
               

               
               601-1149, gnl|loxAfr1|scaffold_29989 (53596-53197)
               

               
               601-1149, gnl|mm7|chr2 (103569196-103568931)
               

               
               601-1149, gnl|oryCun1|scaffold_198377 (102721-103093)
               

               
               601-1149, gnl|panTro1|chr6 (138890284-138890642)
               

               
               601-1149, gnl|rheMac2|chr3 (174538006-174538384)
               

               
               601-1149, gnl|rn3|chr3 (88908578-88908313)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               med (0.232504)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               jej (0.0989218)

	112-266, + strand, RNAz p=0.987161
	601-716, - strand, RNAz p=0.729547
	894-1013, - strand, RNAz p=0.644812

	941-1029, - strand, RNAmicro p=0.999974
	854-925, + strand, RNAmicro p=0.999176
	160-220, + strand, RNAmicro p=0.9863
	950-1008, + strand, RNAmicro p=0.979914

	37-379, gnl\|bosTau2\|chr15 (39093260-39092931)
	37-379, gnl\|Hg17\|chr11 (34130271-34129921)

	444-576, gnl\|bosTau2\|chr15 (39092817-39092678)
	444-576, gnl\|canFam2\|chr18 (36670318-36670094)
	444-576, gnl\|hg17\|chr11 (34129555-34129782)
	444-576, gnl\|Hg17\|chr11 (34129808-34129637)
	444-576, gnl\|loxAfr1\|scaffold_29989 (53119-52920)
	444-576, gnl\|mm7\|chr2 (103568881-103568696)
	444-576, gnl\|monDom2\|scaffold_10 (80379852-80380075)
	444-576, gnl\|oryCun1\|scaffold_198377 (103157-103387)
	444-576, gnl\|panTro1\|chr9 (34515708-34515936)
	444-576, gnl\|rheMac2\|chr14 (37668890-37668672)
	444-576, gnl\|rn3\|chr3 (88908263-88908104)

	601-1149, gnl\|bosTau2\|chr15 (39092677-39092110)
	601-1149, gnl\|canFam2\|chr18 (36670751-36670376)
	601-1149, gnl\|dasNov1\|scaffold_112296 (2956-2581)
	601-1149, gnl\|Hg17\|chr11 (34129636-34129110)
	601-1149, gnl\|hg17\|chr7 (136170660-136171018)
	601-1149, gnl\|loxAfr1\|scaffold_29989 (53596-53197)
	601-1149, gnl\|mm7\|chr2 (103569196-103568931)
	601-1149, gnl\|oryCun1\|scaffold_198377 (102721-103093)
	601-1149, gnl\|panTro1\|chr6 (138890284-138890642)
	601-1149, gnl\|rheMac2\|chr3 (174538006-174538384)
	601-1149, gnl\|rn3\|chr3 (88908578-88908313)