Ss1.1-Mixn-0027k19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGACCTACAGAGGACCTCACCGTCAGAGTGGAAAGACTAACGAAAAAGCTTGAAGAAAG AAGAGAAGAGAAAAGGAAAGAGGAAGAACAGAGAGAAATTAAGAAGGAAATTGAGAGGAG GAAAACTGGTAAAGAAATGTTGGATTATAAAAGAAAGCAAGAAGAAGAATTAACAAAAAG AATGTTAGAGGAAAGAAACAGAGAAAAGGCAGAAGATAGGGCAGCTCGAGAGCGTATAAA ACAGCAGATTGCACTGGACCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGA AGTAGAAGCTGCTAAAGCTGCTGCCCTGCTGGCCAAACAGGCAGAAGTGGAAGCTAAGAG AGATTCTTCCACAAGAGAAAGGAGCTCTGTTGCAAGAATTCAATTCCGTCTTCCTGATGG TTCTTCCTTTACAAATCAGTTTCCTTCTGATGCTCCTCTAGAAGAGGCAAGGCAGTTTGC TGCACAGACTGTTGGCAACACTTATGGTAATTTTTCACTAGCAACCATGTTTCCCAGGAG GGAATTTACCAAAGAAGATTATAAAAAGAAATTATTGGATTTGGAACTTGCCCCAAGTGC TTCAGTGGTACTATTGCCAGCAGGAAGACCAACTACATCCATGGTACATTCTTCCAGTGG AGACTTTTGGACCTTGTTGGGGACAGTACTTTACCCATTCCTGGCCATCTGGAGATTGAT TAGCAACTTCCTATTTAGTAATCCTCCTGCACAGACCTCAGTGAGAACAGCATCAGTGGA ATCCTCAAACCTTGCATCTGCTAGCAACTCGGAGAAAAGGGAACCAGTCAGAAAAAGAGT GCTGGAGAAACGGGGGGAAGACTTTAAAAAGGAGGGCAAGATATATAGACTGAGGACTCA AGACGATGGTGAAGACGAAAACAACACTTGGAATGGGAATTCTACGCAACAGATGTAGTG TGACAAGTACAATATGCGCAATAATGATTGTTTCTCTTATGATTTCATTCAGCTAAAATT CTACTGGAGAAGTGGGACTGCTTTATGTTTTCCAACTCACTACCAAGTGTCTCTTTATTC CTGCTTAGTGGGTTCAAGTTGTTTAACTCAGACAAGTCAAGAGAGAAAATAACTGGCTGC TAGGTCCTTGTATATGGTAACCAACTGCTAGAAGCCTAAAAACAACAACAACAACAACAA AATCAAAAGGTCTGCGACAACCTCCCTTTATCAGCTCTCTTATTCAGTATTTCATGTACC CGTTAGCCCTGTGCTCTTAAGACGACAGGTTTTGTTTAGGGCTGTTTTGCTTCAGAACTC CTAAACCCAGAGTAACTGGTATGTCACGGAGTAATCTGACTCTGAGTCAGAGCATTTTAA CTAGCCTATCAGATGATAATCTAGGCTTAACTTTTCTCCTTTTGCTCATCAGCTGCAAGC AAAATCTTGTAGTTTTTAATCTTACTTAAATACTGAATAAAAAAATCTTTTCCAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGACCTACAGAGGACCTCACCGTCAGAGTGGAAAGACTAACGAAAAAGCTTGAAGAAAG AAGAGAAGAGAAAAGGAAAGAGGAAGAACAGAGAGAAATTAAGAAGGAAATTGAGAGGAG GAAAACTGGTAAAGAAATGTTGGATTATAAAAGAAAGCAAGAAGAAGAATTAACAAAAAG AATGTTAGAGGAAAGAAACAGAGAAAAGGCAGAAGATAGGGCAGCTCGAGAGCGTATAAA ACAGCAGATTGCACTGGACCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGA AGTAGAAGCTGCTAAAGCTGCTGCCCTGCTGGCCAAACAGGCAGAAGTGGAAGCTAAGAG AGATTCTTCCACAAGAGAAAGGAGCTCTGTTGCAAGAATTCAATTCCGTCTTCCTGATGG TTCTTCCTTTACAAATCAGTTTCCTTCTGATGCTCCTCTAGAAGAGGCAAGGCAGTTTGC TGCACAGACTGTTGGCAACACTTATGGTAATTTTTCACTAGCAACCATGTTTCCCAGGAG GGAATTTACCAAAGAAGATTATAAAAAGAAATTATTGGATTTGGAACTTGCCCCAAGTGC TTCAGTGGTACTATTGCCAGCAGGAAGACCAACTACATCCATGGTACATTCTTCCAGTGG AGACTTTTGGACCTTGTTGGGGACAGTACTTTACCCATTCCTGGCCATCTGGAGATTGAT TAGCAACTTCCTATTTAGTAATCCTCCTGCACAGACCTCAGTGAGAACAGCATCAGTGGA ATCCTCAAACCTTGCATCTGCTAGCAACTCGGAGAAAAGGGAACCAGTCAGAAAAAGAGT GCTGGAGAAACGGGGGGAAGACTTTAAAAAGGAGGGCAAGATATATAGACTGAGGACTCA AGACGATGGTGAAGACGAAAACAACACTTGGAATGGGAATTCTACGCAACAGATGTAGTG TGACAAGTACAATATGCGCAATAATGATTGTTTCTCTTATGATTTCATTCAGCTAAAATT CTACTGGAGAAGTGGGACTGCTTTATGTTTTCCAACTCACTACCAAGTGTCTCTTTATTC CTGCTTAGTGGGTTCAAGTTGTTTAACTCAGACAAGTCAAGAGAGAAAATAACTGGCTGC TAGGTCCTTGTATATGGTAACCAACTGCTAGAAGCCTAAAAACAACAACAACAACAACAA AATCAAAAGGTCTGCGACAACCTCCCTTTATCAGCTCTCTTATTCAGTATTTCATGTACC CGTTAGCCCTGTGCTCTTAAGACGACAGGTTTTGTTTAGGGCTGTTTTGCTTCAGAACTC CTAAACCCAGAGTAACTGGTATGTCACGGAGTAATCTGACTCTGAGTCAGAGCATTTTAA CTAGCCTATCAGATGATAATCTAGGCTTAACTTTTCTCCTTTTGCTCATCAGCTGCAAGC AAAATCTTGTAGTTTTTAATCTTACTTAAATACTGAATAAAAAAATCTTTTCCAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 503-620, - strand, RNAz p=0.823707 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 503-620, - strand, RNAz p=0.823707 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 89-257, gnl|bosTau2|chr2 (37960742-37960574) | |
| 89-257, gnl|Hg17|chr2 (136361870-136362038) | |
| 89-257, gnl|Mm7|chr1 (128142921-128143089) | |
| 484-620, gnl|bosTau2|chr2 (37953685-37953549) | |
| 484-620, gnl|canFam2|chr19 (41584114-41584298) | |
| 484-620, gnl|dasNov1|scaffold_19551 (11010-10837) | |
| 484-620, gnl|fr1|chrUn (259617231-259617390) | |
| 484-620, gnl|galGal2|chr7 (31324249-31324419) | |
| 484-620, gnl|hg17|chr2 (136370212-136370389) | |
| 484-620, gnl|Hg17|chr2 (136370246-136370382) | |
| 484-620, gnl|loxAfr1|scaffold_3003 (37968-37783) | |
| 484-620, gnl|mm7|chr1 (128152908-128153091) | |
| 484-620, gnl|Mm7|chr1 (128152948-128153084) | |
| 484-620, gnl|monDom2|scaffold_2 (21381146-21381327) | |
| 484-620, gnl|oryCun1|scaffold_195653 (32970-33155) | |
| 484-620, gnl|panTro1|chr13 (25359499-25359676) | |
| 484-620, gnl|rheMac2|chr13 (116381523-116381345) | |
| 484-620, gnl|rn3|chr13 (40990638-40990821) | |
| 484-620, gnl|tetNig1|chr2 (7064372-7064222) | |
| 484-620, gnl|xenTro1|scaffold_31 (3139118-3138944) | |
| 818-1400, gnl|bosTau2|chr2 (37949776-37949215) | |
| 818-1400, gnl|Hg17|chr2 (136374049-136374634) | |
| 818-1400, gnl|Mm7|chr1 (128157086-128157611) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-257, gnl|bosTau2|chr2 (37960742-37960574) | |
| 89-257, gnl|Hg17|chr2 (136361870-136362038) | |
| 89-257, gnl|Mm7|chr1 (128142921-128143089) | |
| 484-620, gnl|bosTau2|chr2 (37953685-37953549) | |
| 484-620, gnl|canFam2|chr19 (41584114-41584298) | |
| 484-620, gnl|dasNov1|scaffold_19551 (11010-10837) | |
| 484-620, gnl|fr1|chrUn (259617231-259617390) | |
| 484-620, gnl|galGal2|chr7 (31324249-31324419) | |
| 484-620, gnl|hg17|chr2 (136370212-136370389) | |
| 484-620, gnl|Hg17|chr2 (136370246-136370382) | |
| 484-620, gnl|loxAfr1|scaffold_3003 (37968-37783) | |
| 484-620, gnl|mm7|chr1 (128152908-128153091) | |
| 484-620, gnl|Mm7|chr1 (128152948-128153084) | |
| 484-620, gnl|monDom2|scaffold_2 (21381146-21381327) | |
| 484-620, gnl|oryCun1|scaffold_195653 (32970-33155) | |
| 484-620, gnl|panTro1|chr13 (25359499-25359676) | |
| 484-620, gnl|rheMac2|chr13 (116381523-116381345) | |
| 484-620, gnl|rn3|chr13 (40990638-40990821) | |
| 484-620, gnl|tetNig1|chr2 (7064372-7064222) | |
| 484-620, gnl|xenTro1|scaffold_31 (3139118-3138944) | |
| 818-1400, gnl|bosTau2|chr2 (37949776-37949215) | |
| 818-1400, gnl|Hg17|chr2 (136374049-136374634) | |
| 818-1400, gnl|Mm7|chr1 (128157086-128157611) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| tes (0.831255) | |
| rec (0.519211) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| spc (0.340097) | |
| tbr (0.308356) | |
| ste (0.270416) | |
| ova (0.258264) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| duo (0.172801) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ldo (0.0970026) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.831255) | |
| rec (0.519211) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| spc (0.340097) | |
| tbr (0.308356) | |
| ste (0.270416) | |
| ova (0.258264) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| duo (0.172801) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ldo (0.0970026) |