Non-Coding RNA Search

Ss1.1-Mixn-0027k21.5

Sequence:


               
               CGGAGGCCCACCGAGGTGGCGTGAGGTTGTTGGTGCCATTGCGAGGCCTCGGGGACGTCC
TGTGTCAGCATCGAGGTCCAGGGGGCTCCGGGTTGGGATCCAGGTTCTGTGATGCAAGGA
AAAGGAAAAGAGACAGTAGGTACCACCCGTTTAGCAATAAAGGAGGATCCTTCTGTACTA
GAAACTGGATGTGTTAGGATGTAACCAGTGTCTGTCTTGTGACCTTGTGCTTTTGGAGTC
AGACAGAACGTGTGGTCAGCTTGCACAAAGGAGGGTAGGCAGTGATCACTGAGGCTCAGA
CCAACCAGACAGGGCGGCTTCCTCATGGTGCTTGTTTATTATTATCTATTTAATCCTGCT
TGACACTTTACCCAGGGAGACAGTCCCTGTTGCCAGTCGATGCTACAGCGTTATTCATAG
AGTCGGTGACTGGTTAGAGAAATTCATGTGCTCAGCCAATCACGGTTTCAAACAAAATTT
TTATGTGCAAAGGACGGCAACCTTCTCGTATGTTAAACCACCAGTAAGCTTTGTACATCT
GTGATAACGCCTGTTTTATATTCAAATGAACAAATAAAAGCTTTTATTTTTGTTGCTCTG
AAAATAGCCGTTTCTTAATTGGTCCCCTGGAGAAGTGGGGGAGCTTCTGTCCCAGGAAGG
AAGCGGCTCCTACCAGGAGTGTATCCGACTCTGTTTACGTAATTTGTCGCTTTACTTATC
AGTACAGATAATCATACTTTGAACAATGTTTAAATTTTGATGTGGGCATTTCTTGCTGAA
AATTCCTATGGCAACAAATGTTTGGTGAAATGTTTTTTTTTTTAATTCTTTTAAATATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGGCCCACCGAGGTGGCGTGAGGTTGTTGGTGCCATTGCGAGGCCTCGGGGACGTCC
TGTGTCAGCATCGAGGTCCAGGGGGCTCCGGGTTGGGATCCAGGTTCTGTGATGCAAGGA
AAAGGAAAAGAGACAGTAGGTACCACCCGTTTAGCAATAAAGGAGGATCCTTCTGTACTA
GAAACTGGATGTGTTAGGATGTAACCAGTGTCTGTCTTGTGACCTTGTGCTTTTGGAGTC
AGACAGAACGTGTGGTCAGCTTGCACAAAGGAGGGTAGGCAGTGATCACTGAGGCTCAGA
CCAACCAGACAGGGCGGCTTCCTCATGGTGCTTGTTTATTATTATCTATTTAATCCTGCT
TGACACTTTACCCAGGGAGACAGTCCCTGTTGCCAGTCGATGCTACAGCGTTATTCATAG
AGTCGGTGACTGGTTAGAGAAATTCATGTGCTCAGCCAATCACGGTTTCAAACAAAATTT
TTATGTGCAAAGGACGGCAACCTTCTCGTATGTTAAACCACCAGTAAGCTTTGTACATCT
GTGATAACGCCTGTTTTATATTCAAATGAACAAATAAAAGCTTTTATTTTTGTTGCTCTG
AAAATAGCCGTTTCTTAATTGGTCCCCTGGAGAAGTGGGGGAGCTTCTGTCCCAGGAAGG
AAGCGGCTCCTACCAGGAGTGTATCCGACTCTGTTTACGTAATTTGTCGCTTTACTTATC
AGTACAGATAATCATACTTTGAACAATGTTTAAATTTTGATGTGGGCATTTCTTGCTGAA
AATTCCTATGGCAACAAATGTTTGGTGAAATGTTTTTTTTTTTAATTCTTTTAAATATAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-840, gnl|bosTau2|chr13 (31943187-31942339)
               

               
               4-840, gnl|Hg17|chr10 (310933-310160)
               

               
               4-840, gnl|Mm7|chr13 (9581213-9581999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-840, gnl|bosTau2|chr13 (31943187-31942339)
               

               
               4-840, gnl|Hg17|chr10 (310933-310160)
               

               
               4-840, gnl|Mm7|chr13 (9581213-9581999)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               sme (0.305437)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               spc (0.113366)

	4-840, gnl\|bosTau2\|chr13 (31943187-31942339)
	4-840, gnl\|Hg17\|chr10 (310933-310160)
	4-840, gnl\|Mm7\|chr13 (9581213-9581999)

	sme (0.305437)
	ece (0.229305)
	cmu (0.186393)
	gul (0.177588)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	spc (0.113366)