Non-Coding RNA Search

Ss1.1-Mixn-0027l22.5

Sequence:


               
               GGGCAGAGATTATGGATGTTCTGCTGCATCAAGTTCAATCCCTAGTAAAAAAAAAAGAGA
------------------------------------------------------------
------------------------------------------------GCTACAAAAAGG
AGAGAGAAAAGGGGGTTTAAGTTACTAGAAATGGAGACATTCTGGAGCCTTCCTGGGACA
GAGGAAAGAGGTTTATCACTGGGTAGAGGGACAAGAGCTGTTCTTAAGCTGGGACTTCTT
ATGGTCACATTGTTTAGTTGAGCCACAAAGGCTGGTTGCCTTAACCAGGAAGTGGGAGGA
TCCCTGTTAAAGTATACTAGGTTAAAGGAGAAACTTGAAAAGCTGGCAGTTCTGGAAGCC
ATCATGGTGGTTCTAATTCCTCAAAATTCAAGGGGAGAAAACCAGCAGTTCTAGCGGACT
GGGATTTACTGGGAATAAAGACAACTCACATCTCAAAAGGAATGCTTGCAAATAACCTTA
AGTTGCAGAACATAAATTCTCTTAAAAATGAGGATTTTTTCCCAGTAGGTCATAATGTTA
GCTGCCCTATTTCAGTGACAGTTCACTTGGAACTTCTGCATTTTGATCATGTGCAAATGG
GGGAAATAAAACGTTATCACAAATACATAAATACAAGACTTAGATGAAGACAGAGATCTC
TATCTGAGCCCCCACTGGGTCGCGTGGATTCTTTACTTGGTTGCTAAGTCAAGCGACAGC
TAGAGAACTGTAGGCCCGGAGCGGACGAGAGATTTCGGACCCGGGGGCCGACCACGCGGT
GCGAGTGCCAGTGCTGGGGCCGTAGGACCAACGCGGTCGCCAGAATTTCCTCAGGCGCAC
CTGCCCTCTCCAGGACCACAGCCAAATCCCCGCCCCAACCAGTTGCCTCTTCCGGAAGTT
CGACCCCAATACTTCCGGTTCTGCTTGTTCCTTCCGGTCGCCATGTCGATGGGGCGTCTT
GGGGTCGAGGAGACTTTGGCAGCCCTCAACGCAGCCCTGGGACCTGGCGGCCCAGTGTGG
TACAAGGAGACGCGAGCCCGCCATCTGCGTGCCCGAGACTTCTTGGCGCCGCGGCGCGCG
CTACAGGCGCGCTTCGAGGAGGGCCAGGTAGGCACGGTCTTCCCGCANGGCGAGTTTGGG
GTAGCCGGAGCGCCGCGGCCGGCTCACCGGCTGGTCTCCACAGGTGCCCAGCAGGTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGAGATTATGGATGTTCTGCTGCATCAAGTTCAATCCCTAGTAAAAAAAAAAGAGA
------------------------------------------------------------
------------------------------------------------GCTACAAAAAGG
AGAGAGAAAAGGGGGTTTAAGTTACTAGAAATGGAGACATTCTGGAGCCTTCCTGGGACA
GAGGAAAGAGGTTTATCACTGGGTAGAGGGACAAGAGCTGTTCTTAAGCTGGGACTTCTT
ATGGTCACATTGTTTAGTTGAGCCACAAAGGCTGGTTGCCTTAACCAGGAAGTGGGAGGA
TCCCTGTTAAAGTATACTAGGTTAAAGGAGAAACTTGAAAAGCTGGCAGTTCTGGAAGCC
ATCATGGTGGTTCTAATTCCTCAAAATTCAAGGGGAGAAAACCAGCAGTTCTAGCGGACT
GGGATTTACTGGGAATAAAGACAACTCACATCTCAAAAGGAATGCTTGCAAATAACCTTA
AGTTGCAGAACATAAATTCTCTTAAAAATGAGGATTTTTTCCCAGTAGGTCATAATGTTA
GCTGCCCTATTTCAGTGACAGTTCACTTGGAACTTCTGCATTTTGATCATGTGCAAATGG
GGGAAATAAAACGTTATCACAAATACATAAATACAAGACTTAGATGAAGACAGAGATCTC
TATCTGAGCCCCCACTGGGTCGCGTGGATTCTTTACTTGGTTGCTAAGTCAAGCGACAGC
TAGAGAACTGTAGGCCCGGAGCGGACGAGAGATTTCGGACCCGGGGGCCGACCACGCGGT
GCGAGTGCCAGTGCTGGGGCCGTAGGACCAACGCGGTCGCCAGAATTTCCTCAGGCGCAC
CTGCCCTCTCCAGGACCACAGCCAAATCCCCGCCCCAACCAGTTGCCTCTTCCGGAAGTT
CGACCCCAATACTTCCGGTTCTGCTTGTTCCTTCCGGTCGCCATGTCGATGGGGCGTCTT
GGGGTCGAGGAGACTTTGGCAGCCCTCAACGCAGCCCTGGGACCTGGCGGCCCAGTGTGG
TACAAGGAGACGCGAGCCCGCCATCTGCGTGCCCGAGACTTCTTGGCGCCGCGGCGCGCG
CTACAGGCGCGCTTCGAGGAGGGCCAGGTAGGCACGGTCTTCCCGCANGGCGAGTTTGGG
GTAGCCGGAGCGCCGCGGCCGGCTCACCGGCTGGTCTCCACAGGTGCCCAGCAGGTCATT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               101-545, gnl|bosTau2|chr22 (40015205-40014760)
               

               
               101-545, gnl|Hg17|chr3 (49032421-49031388)
               


               
               793-1141, gnl|bosTau2|chr22 (40014418-40014071)
               

               
               793-1141, gnl|Hg17|chr3 (49031112-49030750)
               

               
               793-1141, gnl|Mm7|chr9 (108282475-108282824)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-545, gnl|bosTau2|chr22 (40015205-40014760)
               

               
               101-545, gnl|Hg17|chr3 (49032421-49031388)
               


               
               793-1141, gnl|bosTau2|chr22 (40014418-40014071)
               

               
               793-1141, gnl|Hg17|chr3 (49031112-49030750)
               

               
               793-1141, gnl|Mm7|chr9 (108282475-108282824)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	101-545, gnl\|bosTau2\|chr22 (40015205-40014760)
	101-545, gnl\|Hg17\|chr3 (49032421-49031388)

	793-1141, gnl\|bosTau2\|chr22 (40014418-40014071)
	793-1141, gnl\|Hg17\|chr3 (49031112-49030750)
	793-1141, gnl\|Mm7\|chr9 (108282475-108282824)