Non-Coding RNA Search

Ss1.1-Mixn-0027n18.5

Sequence:


               
               GGCCCTGCCTTACTGCTCTCCCAGGCTCTCCCTTACCTGAGGACTGAGATTTAAGGTTCC
ATTACCCGCCAGGGGCATTTCCAGAAGGCTCCTTTCTGGGGACGTTTTCCTCCTACCCCC
TCTAGTTCTGGCCAAGGCAGGCCGAGGATCCTCGCCCAGATCCAGTTCCTCACCCAAGCT
ATGTCTAAGAAGGGGAAAAAGGCCAAGATTCCCCTGTCGGATGAGGAGCAGCTGCTTCTG
TTTCAGCAGAAGTTGCTTGCAGAGGAGGAGATGGCCAAGAAGAAAGAGAGGCTCCTGAAC
CAGTTCTTGAAGGACAAGCTGGCCAAGGAGGAGCACAACAGTGCTATGAACCTTAATAAG
ATTAATACTCAATGGAGAACAGTCCTTCGGGAAGTCAAGACCAGGGAGCTTCATAAGGAC
ATTGAGATCCTCAGCCAAACCTTTGAACGAGTGGTGGACTGCAAGGACAGTGTCATCAAG
TCTTTAGCGAAGGACCTGTCAGAAGCAGAGGAGCAGTACGCCCACGCCCTGCGCAGCCAC
TTGCACAACATTGACCAGCTCTTGGCCCTGCAGAGATGCCGGCTCAGCCTCCTCGAGGAA
AATTACAACATGGAGCTGGAGTCCCTAACCAAGGAGTTCGAGACAGAAAGGAAGACAATT
GTTGACCAGCATGAAAAAGAGATTCGCTACCTACAAGATGTCTTCATGGCCATGGAGCAA
AACTATATAGATTCTGAGTATGAAAGCAAGCTGGAGTTCCAGAGCATGTGGGATGATCTC
AAAAACAAGAATTTAGAAGAGAAGCACTTTTTAAGACTGCAACTGGAGAATGCGGTAGAA
GATCTATGGAGGAGATTCCAGGATGCACTCAAGAATTACACTGATGCCACAGAGGATCGA
AAGATCGCCTTCGAGACTCTAAAGGTGAAGGATGAGAGGAGCTCCAAAGAGATTGAAGCA
CAGATGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCTGCCTTACTGCTCTCCCAGGCTCTCCCTTACCTGAGGACTGAGATTTAAGGTTCC
ATTACCCGCCAGGGGCATTTCCAGAAGGCTCCTTTCTGGGGACGTTTTCCTCCTACCCCC
TCTAGTTCTGGCCAAGGCAGGCCGAGGATCCTCGCCCAGATCCAGTTCCTCACCCAAGCT
ATGTCTAAGAAGGGGAAAAAGGCCAAGATTCCCCTGTCGGATGAGGAGCAGCTGCTTCTG
TTTCAGCAGAAGTTGCTTGCAGAGGAGGAGATGGCCAAGAAGAAAGAGAGGCTCCTGAAC
CAGTTCTTGAAGGACAAGCTGGCCAAGGAGGAGCACAACAGTGCTATGAACCTTAATAAG
ATTAATACTCAATGGAGAACAGTCCTTCGGGAAGTCAAGACCAGGGAGCTTCATAAGGAC
ATTGAGATCCTCAGCCAAACCTTTGAACGAGTGGTGGACTGCAAGGACAGTGTCATCAAG
TCTTTAGCGAAGGACCTGTCAGAAGCAGAGGAGCAGTACGCCCACGCCCTGCGCAGCCAC
TTGCACAACATTGACCAGCTCTTGGCCCTGCAGAGATGCCGGCTCAGCCTCCTCGAGGAA
AATTACAACATGGAGCTGGAGTCCCTAACCAAGGAGTTCGAGACAGAAAGGAAGACAATT
GTTGACCAGCATGAAAAAGAGATTCGCTACCTACAAGATGTCTTCATGGCCATGGAGCAA
AACTATATAGATTCTGAGTATGAAAGCAAGCTGGAGTTCCAGAGCATGTGGGATGATCTC
AAAAACAAGAATTTAGAAGAGAAGCACTTTTTAAGACTGCAACTGGAGAATGCGGTAGAA
GATCTATGGAGGAGATTCCAGGATGCACTCAAGAATTACACTGATGCCACAGAGGATCGA
AAGATCGCCTTCGAGACTCTAAAGGTGAAGGATGAGAGGAGCTCCAAAGAGATTGAAGCA
CAGATGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PAP9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PAP9_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-115, - strand, RNAz p=0.507902
               

               
               193-313, - strand, RNAz p=0.956179

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-115, - strand, RNAz p=0.507902
               

               
               193-313, - strand, RNAz p=0.956179

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               3-313, gnl|bosTau2|chr5 (26215361-26215065)
               

               
               3-313, gnl|Hg17|chr12 (47584206-47584519)
               

               
               3-313, gnl|Mm7|chr15 (98693713-98694025)
               


               
               479-651, gnl|bosTau2|chr5 (26211082-26210910)
               

               
               479-651, gnl|Hg17|chr12 (47594452-47594624)
               

               
               479-651, gnl|Mm7|chr15 (98702921-98703093)
               


               
               788-972, gnl|bosTau2|chr5 (26209076-26208892)
               

               
               788-972, gnl|canFam2|chr27 (8651892-8651694)
               

               
               788-972, gnl|dasNov1|scaffold_3021 (44993-45194)
               

               
               788-972, gnl|hg17|chr12 (47598324-47598525)
               

               
               788-972, gnl|Hg17|chr12 (47598323-47598507)
               

               
               788-972, gnl|loxAfr1|scaffold_5954 (44854-45037)
               

               
               788-972, gnl|mm7|chr15 (98706083-98706284)
               

               
               788-972, gnl|Mm7|chr15 (98706082-98706266)
               

               
               788-972, gnl|monDom2|scaffold_15 (3632930-3633130)
               

               
               788-972, gnl|panTro1|chr10 (48771352-48771553)
               

               
               788-972, gnl|rheMac2|chr11 (46043343-46043544)
               

               
               788-972, gnl|rn3|chr7 (137563789-137563990)
               

               
               788-972, gnl|xenTro1|scaffold_133 (1339658-1339859)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-313, gnl|bosTau2|chr5 (26215361-26215065)
               

               
               3-313, gnl|Hg17|chr12 (47584206-47584519)
               

               
               3-313, gnl|Mm7|chr15 (98693713-98694025)
               


               
               479-651, gnl|bosTau2|chr5 (26211082-26210910)
               

               
               479-651, gnl|Hg17|chr12 (47594452-47594624)
               

               
               479-651, gnl|Mm7|chr15 (98702921-98703093)
               


               
               788-972, gnl|bosTau2|chr5 (26209076-26208892)
               

               
               788-972, gnl|canFam2|chr27 (8651892-8651694)
               

               
               788-972, gnl|dasNov1|scaffold_3021 (44993-45194)
               

               
               788-972, gnl|hg17|chr12 (47598324-47598525)
               

               
               788-972, gnl|Hg17|chr12 (47598323-47598507)
               

               
               788-972, gnl|loxAfr1|scaffold_5954 (44854-45037)
               

               
               788-972, gnl|mm7|chr15 (98706083-98706284)
               

               
               788-972, gnl|Mm7|chr15 (98706082-98706266)
               

               
               788-972, gnl|monDom2|scaffold_15 (3632930-3633130)
               

               
               788-972, gnl|panTro1|chr10 (48771352-48771553)
               

               
               788-972, gnl|rheMac2|chr11 (46043343-46043544)
               

               
               788-972, gnl|rn3|chr7 (137563789-137563990)
               

               
               788-972, gnl|xenTro1|scaffold_133 (1339658-1339859)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	3-115, - strand, RNAz p=0.507902
	193-313, - strand, RNAz p=0.956179

	3-313, gnl\|bosTau2\|chr5 (26215361-26215065)
	3-313, gnl\|Hg17\|chr12 (47584206-47584519)
	3-313, gnl\|Mm7\|chr15 (98693713-98694025)

	479-651, gnl\|bosTau2\|chr5 (26211082-26210910)
	479-651, gnl\|Hg17\|chr12 (47594452-47594624)
	479-651, gnl\|Mm7\|chr15 (98702921-98703093)

	788-972, gnl\|bosTau2\|chr5 (26209076-26208892)
	788-972, gnl\|canFam2\|chr27 (8651892-8651694)
	788-972, gnl\|dasNov1\|scaffold_3021 (44993-45194)
	788-972, gnl\|hg17\|chr12 (47598324-47598525)
	788-972, gnl\|Hg17\|chr12 (47598323-47598507)
	788-972, gnl\|loxAfr1\|scaffold_5954 (44854-45037)
	788-972, gnl\|mm7\|chr15 (98706083-98706284)
	788-972, gnl\|Mm7\|chr15 (98706082-98706266)
	788-972, gnl\|monDom2\|scaffold_15 (3632930-3633130)
	788-972, gnl\|panTro1\|chr10 (48771352-48771553)
	788-972, gnl\|rheMac2\|chr11 (46043343-46043544)
	788-972, gnl\|rn3\|chr7 (137563789-137563990)
	788-972, gnl\|xenTro1\|scaffold_133 (1339658-1339859)