Ss1.1-Mixn-0027o13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTTTACCTGCTCAGGCGGTGTGTGGCGGTCGTCGGAGGCAGTGGGGCGCGGAGCCGGG CCGCTGGGGCCTCCCCAGGGCCGCAGCGGCGGCAATTGGGCCCCCCGCCCCAGCCAGCGG CCGGAGAGCGCAGGAAGGGGGCCGGGGGGACCCGCCCCCGGCCGGCCGCAGTCATGAACT CCAATGTGGAGAACCTACCCCCGCACATTATCCGCCTGGTGTACAAAGAGGTGACGACAC TGACAGCTGACCCACCTGATGGCATCAAGGTCTTCCCCAACGAGGAGGACCTCACTGACC TGCAGGTCACCATCGAGGGCCCTGAGGGGACCCCATACGCCGGAGGCCTCTTCCGCATGA AACTCCTGCTGGGGAAGGACTTTCCTGCCTCCCCACCCAAGGGCTACTTCCTGACCAAGA TCTTCCACCCAAATGTGGGCGCCAACGGTGAGATCTGTGTCAACGTGCTCAAGAGGGACT GGACAGCTGAGCTGGGCATCCGGCATGTGCTGCTGACCATCAAGTGCCTGCTGATCCACC CAAACCCCGAGTCTGCCCTCAACGAGGAGGCTGGCCGCCTGCTCCTGGAGAACTATGAGG AGTACGCCGCCCGCGCGCGCCTGCTCACTGAGATCCACGGGGGCTCGGGCGGGCCCAGTG GTGGGAGGGCCGAGGCCAGCCGGGCCCTGGCCAGCGGGGCTGCCGCTTCCCCCACGGAGC CCATGGCCCCTGGGGGCCCGGGAGGGGCCGAGGGTCCCATGGCCAAGAAACATGCTGGCG AGCGAGATAAGAAGCTGGCCGCCAAGAAAAAGACGGACAAGAAGCGGGCGCTGCGGCGGC TGTAGCGGGCTCTCCTCCCCCACCCCCCACCCGACCCCAACTCTTCTCTAATAAGTTATT TAAATTATGGCTGGGGTGGGGGAGGGCGTGGGGGCACTGGGACCTGGATTTGTTTTTCTA AATAAAGTTGGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTTTACCTGCTCAGGCGGTGTGTGGCGGTCGTCGGAGGCAGTGGGGCGCGGAGCCGGG CCGCTGGGGCCTCCCCAGGGCCGCAGCGGCGGCAATTGGGCCCCCCGCCCCAGCCAGCGG CCGGAGAGCGCAGGAAGGGGGCCGGGGGGACCCGCCCCCGGCCGGCCGCAGTCATGAACT CCAATGTGGAGAACCTACCCCCGCACATTATCCGCCTGGTGTACAAAGAGGTGACGACAC TGACAGCTGACCCACCTGATGGCATCAAGGTCTTCCCCAACGAGGAGGACCTCACTGACC TGCAGGTCACCATCGAGGGCCCTGAGGGGACCCCATACGCCGGAGGCCTCTTCCGCATGA AACTCCTGCTGGGGAAGGACTTTCCTGCCTCCCCACCCAAGGGCTACTTCCTGACCAAGA TCTTCCACCCAAATGTGGGCGCCAACGGTGAGATCTGTGTCAACGTGCTCAAGAGGGACT GGACAGCTGAGCTGGGCATCCGGCATGTGCTGCTGACCATCAAGTGCCTGCTGATCCACC CAAACCCCGAGTCTGCCCTCAACGAGGAGGCTGGCCGCCTGCTCCTGGAGAACTATGAGG AGTACGCCGCCCGCGCGCGCCTGCTCACTGAGATCCACGGGGGCTCGGGCGGGCCCAGTG GTGGGAGGGCCGAGGCCAGCCGGGCCCTGGCCAGCGGGGCTGCCGCTTCCCCCACGGAGC CCATGGCCCCTGGGGGCCCGGGAGGGGCCGAGGGTCCCATGGCCAAGAAACATGCTGGCG AGCGAGATAAGAAGCTGGCCGCCAAGAAAAAGACGGACAAGAAGCGGGCGCTGCGGCGGC TGTAGCGGGCTCTCCTCCCCCACCCCCCACCCGACCCCAACTCTTCTCTAATAAGTTATT TAAATTATGGCTGGGGTGGGGGAGGGCGTGGGGGCACTGGGACCTGGATTTGTTTTTCTA AATAAAGTTGGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 674-793, - strand, RNAz p=0.957854 | |
| 865-978, - strand, RNAz p=0.949252 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 674-793, - strand, RNAz p=0.957854 | |
| 865-978, - strand, RNAz p=0.949252 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 176-324, gnl|bosTau2|chr18 (54865288-54865436) | |
| 176-324, gnl|canFam2|chr1 (105360091-105359944) | |
| 176-324, gnl|canFam2|chr1 (105360097-105359936) | |
| 176-324, gnl|danRer3|chr16 (7623189-7623336) | |
| 176-324, gnl|danRer3|chr16 (7623183-7623344) | |
| 176-324, gnl|dasNov1|scaffold_141665 (984-1131) | |
| 176-324, gnl|dasNov1|scaffold_141665 (978-1139) | |
| 176-324, gnl|echTel1|scaffold_227330 (1160-1041) | |
| 176-324, gnl|fr1|chrUn (274296770-274296917) | |
| 176-324, gnl|fr1|chrUn (274296762-274296920) | |
| 176-324, gnl|hg17|chr17 (15548790-15548937) | |
| 176-324, gnl|hg17|chr19 (60609990-60610151) | |
| 176-324, gnl|Hg17|chr19 (60610143-60609995) | |
| 176-324, gnl|mm7|chr7 (4385421-4385582) | |
| 176-324, gnl|Mm7|chr7 (4385574-4385426) | |
| 176-324, gnl|mm7|chr9 (56465431-56465284) | |
| 176-324, gnl|monDom2|scaffold_541 (11912-12060) | |
| 176-324, gnl|monDom2|scaffold_541 (11912-12063) | |
| 176-324, gnl|oryCun1|scaffold_60169 (941-1087) | |
| 176-324, gnl|oryCun1|scaffold_60169 (934-1095) | |
| 176-324, gnl|panTro1|chr19_random (4426962-4427110) | |
| 176-324, gnl|panTro1|chr19_random (4426962-4427110) | |
| 176-324, gnl|rheMac2|chr19 (61428386-61428532) | |
| 176-324, gnl|rheMac2|chr19 (61428379-61428540) | |
| 176-324, gnl|rn3|chr1 (67824346-67824200) | |
| 176-324, gnl|rn3|chr1 (67824353-67824192) | |
| 176-324, gnl|tetNig1|chr8 (8442599-8442746) | |
| 176-324, gnl|tetNig1|chr8 (8442594-8442750) | |
| 176-324, gnl|xenTro1|scaffold_603 (194329-194184) | |
| 176-324, gnl|xenTro1|scaffold_603 (194331-194181) | |
| 515-978, gnl|bosTau2|chr18 (54867878-54868338) | |
| 515-978, gnl|Hg17|chr19 (60604943-60604463) | |
| 515-978, gnl|Mm7|chr7 (4382502-4382031) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-324, gnl|bosTau2|chr18 (54865288-54865436) | |
| 176-324, gnl|canFam2|chr1 (105360091-105359944) | |
| 176-324, gnl|canFam2|chr1 (105360097-105359936) | |
| 176-324, gnl|danRer3|chr16 (7623189-7623336) | |
| 176-324, gnl|danRer3|chr16 (7623183-7623344) | |
| 176-324, gnl|dasNov1|scaffold_141665 (984-1131) | |
| 176-324, gnl|dasNov1|scaffold_141665 (978-1139) | |
| 176-324, gnl|echTel1|scaffold_227330 (1160-1041) | |
| 176-324, gnl|fr1|chrUn (274296770-274296917) | |
| 176-324, gnl|fr1|chrUn (274296762-274296920) | |
| 176-324, gnl|hg17|chr17 (15548790-15548937) | |
| 176-324, gnl|hg17|chr19 (60609990-60610151) | |
| 176-324, gnl|Hg17|chr19 (60610143-60609995) | |
| 176-324, gnl|mm7|chr7 (4385421-4385582) | |
| 176-324, gnl|Mm7|chr7 (4385574-4385426) | |
| 176-324, gnl|mm7|chr9 (56465431-56465284) | |
| 176-324, gnl|monDom2|scaffold_541 (11912-12060) | |
| 176-324, gnl|monDom2|scaffold_541 (11912-12063) | |
| 176-324, gnl|oryCun1|scaffold_60169 (941-1087) | |
| 176-324, gnl|oryCun1|scaffold_60169 (934-1095) | |
| 176-324, gnl|panTro1|chr19_random (4426962-4427110) | |
| 176-324, gnl|panTro1|chr19_random (4426962-4427110) | |
| 176-324, gnl|rheMac2|chr19 (61428386-61428532) | |
| 176-324, gnl|rheMac2|chr19 (61428379-61428540) | |
| 176-324, gnl|rn3|chr1 (67824346-67824200) | |
| 176-324, gnl|rn3|chr1 (67824353-67824192) | |
| 176-324, gnl|tetNig1|chr8 (8442599-8442746) | |
| 176-324, gnl|tetNig1|chr8 (8442594-8442750) | |
| 176-324, gnl|xenTro1|scaffold_603 (194329-194184) | |
| 176-324, gnl|xenTro1|scaffold_603 (194331-194181) | |
| 515-978, gnl|bosTau2|chr18 (54867878-54868338) | |
| 515-978, gnl|Hg17|chr19 (60604943-60604463) | |
| 515-978, gnl|Mm7|chr7 (4382502-4382031) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| clu (0.717875) | |
| cag (0.302389) | |
| jej (0.296765) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| fty (0.17584) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| cag (0.302389) | |
| jej (0.296765) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| fty (0.17584) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) |