Non-Coding RNA Search

Ss1.1-Mixn-0027o15.5

Sequence:


               
               GTGATGTCATTCACCTCATTGGGTTACCTCCTACTCATTAAGTTTCAACTTTCAGTTAAT
GTCCTGGGATGTGTCCTAGTTGTGCAAATTAGATGCTAGTTAATATAATACTAAGTTACC
CACTTATTGTATTTAGCTAAAACATAATTTCTATATTTACTTTCAATTTATCCACCTAAA
AATGAATTTACATTTTTTACATGCAAGTGTCTCTCGACTGCCATGACACCCATTATCAAT
CTGATACTTGAATCTTGGGAGTCATCATGGAGAGAGATGTTTCAAAATCTAGAGAACAGG
TTCTAAATATGTCTGTCTGTTATGCAATACTTGTATTTTAGTAAGAATCCTTTGTATTTA
CATTTATATAGCACCTTTCATCCAAGAGTTTAAAAGAGATTTAACTTACAGCATTATTTG
GTGGCAAACCTAAGTTAATGGTGGCATTAGTTAAGTCCAAGTTCTCTAACTTCCACTTCA
ATTCCTTTTCAACTATACATGGTATATTTCTTTTTCATTACTGGTCTTTCTGAAAGTAGA
CTGAACCAAAACACTGTTACTGGCCTACCCAAAAGAGAGAAAGAAAAAAGGGTGCAAGAT
GGGAGAGATGAGATATTTCTCACAGCTACCAGATTAGTGATGAAACACACAGTTAATAAA
CCACATACTAGGGAATTATTCCCAAAAGAGTTTTAGAGCTGGTAATGAGAGCCTAAGAAG
TATACTGTTAAAATTTAAAAGTCAGCATATTTCTCATTTCAGACATTTAAGATTATTTTG
ATATTTATGTTAAATAATGAATTTGCATTAGTAAGTATCACTGCATTATTTTGATTTCAT
AAGAAAATAAAACTGTGATATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATGTCATTCACCTCATTGGGTTACCTCCTACTCATTAAGTTTCAACTTTCAGTTAAT
GTCCTGGGATGTGTCCTAGTTGTGCAAATTAGATGCTAGTTAATATAATACTAAGTTACC
CACTTATTGTATTTAGCTAAAACATAATTTCTATATTTACTTTCAATTTATCCACCTAAA
AATGAATTTACATTTTTTACATGCAAGTGTCTCTCGACTGCCATGACACCCATTATCAAT
CTGATACTTGAATCTTGGGAGTCATCATGGAGAGAGATGTTTCAAAATCTAGAGAACAGG
TTCTAAATATGTCTGTCTGTTATGCAATACTTGTATTTTAGTAAGAATCCTTTGTATTTA
CATTTATATAGCACCTTTCATCCAAGAGTTTAAAAGAGATTTAACTTACAGCATTATTTG
GTGGCAAACCTAAGTTAATGGTGGCATTAGTTAAGTCCAAGTTCTCTAACTTCCACTTCA
ATTCCTTTTCAACTATACATGGTATATTTCTTTTTCATTACTGGTCTTTCTGAAAGTAGA
CTGAACCAAAACACTGTTACTGGCCTACCCAAAAGAGAGAAAGAAAAAAGGGTGCAAGAT
GGGAGAGATGAGATATTTCTCACAGCTACCAGATTAGTGATGAAACACACAGTTAATAAA
CCACATACTAGGGAATTATTCCCAAAAGAGTTTTAGAGCTGGTAATGAGAGCCTAAGAAG
TATACTGTTAAAATTTAAAAGTCAGCATATTTCTCATTTCAGACATTTAAGATTATTTTG
ATATTTATGTTAAATAATGAATTTGCATTAGTAAGTATCACTGCATTATTTTGATTTCAT
AAGAAAATAAAACTGTGATATAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               197-315, - strand, RNAz p=0.648552
               

               
               614-726, - strand, RNAz p=0.683615

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-315, - strand, RNAz p=0.648552
               

               
               614-726, - strand, RNAz p=0.683615

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BX648138, -
               

               
               5' of BX648138, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648138, -
               

               
               5' of BX648138, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-436, gnl|bosTau2|chr11 (20361771-20362202)
               

               
               1-436, gnl|canFam2|chr10 (59317187-59317718)
               

               
               1-436, gnl|dasNov1|scaffold_14953 (8956-9480)
               

               
               1-436, gnl|echTel1|scaffold_324776 (6881-6398)
               

               
               1-436, gnl|hg17|chr2 (55427837-55428358)
               

               
               1-436, gnl|Hg17|chr2 (55427973-55428405)
               

               
               1-436, gnl|mm7|chr11 (29461703-29461265)
               

               
               1-436, gnl|Mm7|chr11 (29461614-29461200)
               

               
               1-436, gnl|monDom2|scaffold_1 (18209919-18210460)
               

               
               1-436, gnl|oryCun1|scaffold_176432 (75010-74491)
               

               
               1-436, gnl|panTro1|chr12 (57559003-57559524)
               

               
               1-436, gnl|rheMac2|chr13 (55613966-55614481)
               

               
               1-436, gnl|rn3|chr14 (110553392-110552917)
               


               
               466-864, gnl|bosTau2|chr11 (20362196-20362600)
               

               
               466-864, gnl|Hg17|chr2 (55428399-55428850)
               

               
               466-864, gnl|Mm7|chr11 (29461206-29460791)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-436, gnl|bosTau2|chr11 (20361771-20362202)
               

               
               1-436, gnl|canFam2|chr10 (59317187-59317718)
               

               
               1-436, gnl|dasNov1|scaffold_14953 (8956-9480)
               

               
               1-436, gnl|echTel1|scaffold_324776 (6881-6398)
               

               
               1-436, gnl|hg17|chr2 (55427837-55428358)
               

               
               1-436, gnl|Hg17|chr2 (55427973-55428405)
               

               
               1-436, gnl|mm7|chr11 (29461703-29461265)
               

               
               1-436, gnl|Mm7|chr11 (29461614-29461200)
               

               
               1-436, gnl|monDom2|scaffold_1 (18209919-18210460)
               

               
               1-436, gnl|oryCun1|scaffold_176432 (75010-74491)
               

               
               1-436, gnl|panTro1|chr12 (57559003-57559524)
               

               
               1-436, gnl|rheMac2|chr13 (55613966-55614481)
               

               
               1-436, gnl|rn3|chr14 (110553392-110552917)
               


               
               466-864, gnl|bosTau2|chr11 (20362196-20362600)
               

               
               466-864, gnl|Hg17|chr2 (55428399-55428850)
               

               
               466-864, gnl|Mm7|chr11 (29461206-29460791)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	197-315, - strand, RNAz p=0.648552
	614-726, - strand, RNAz p=0.683615

	1-436, gnl\|bosTau2\|chr11 (20361771-20362202)
	1-436, gnl\|canFam2\|chr10 (59317187-59317718)
	1-436, gnl\|dasNov1\|scaffold_14953 (8956-9480)
	1-436, gnl\|echTel1\|scaffold_324776 (6881-6398)
	1-436, gnl\|hg17\|chr2 (55427837-55428358)
	1-436, gnl\|Hg17\|chr2 (55427973-55428405)
	1-436, gnl\|mm7\|chr11 (29461703-29461265)
	1-436, gnl\|Mm7\|chr11 (29461614-29461200)
	1-436, gnl\|monDom2\|scaffold_1 (18209919-18210460)
	1-436, gnl\|oryCun1\|scaffold_176432 (75010-74491)
	1-436, gnl\|panTro1\|chr12 (57559003-57559524)
	1-436, gnl\|rheMac2\|chr13 (55613966-55614481)
	1-436, gnl\|rn3\|chr14 (110553392-110552917)

	466-864, gnl\|bosTau2\|chr11 (20362196-20362600)
	466-864, gnl\|Hg17\|chr2 (55428399-55428850)
	466-864, gnl\|Mm7\|chr11 (29461206-29460791)