Non-Coding RNA Search

Ss1.1-Mixn-0027p14.5

Sequence:


               
               GCGGCCGCAGTTCCCGGGTGTCTGCGGGCGCGAGCACGTCGCGACCCTGCGGTGCGCCGG
GATAGGGGGCGTGGTGAGGGCGGGGTCTCTCCTGCACAAATAGGAGTGGGGGGGGCGGGG
TGAGCGAAATTTCGCGCCAAGCTTTGGGGGAATCCCGGTGTTGGTGTAGCCAGTTGTCTC
GAAAGTGTTTACAGCCGCCGACATGGTTCGTCCGCTAAACTGCATCGTTGCTGTGTCCCA
GAACATGGGCATTGGCAAGAACGGGGACCTGCCCTGGCCCCCGCTCAGGAACGAATACAA
ATATTTCCAAAGAATGACCACAACCTCTTCAGTAGAAGGCAAACAGAATTTGGTGATTAT
GGGTAGGAAGACCTGGTTCTCCATTCCGGAGAAGAATCGACCTTTAAAGGACAGAATTAA
TATAGTTCTCAGTAGAGAACTCAAGGAACCTCCACAGGGAGCTCATTTTCTTGCCAAAAG
TCTGGATGATGCCTTAAAACTTACTGAGCAGCCAGAATTAAAAAATAAAGTGGACATGGT
TTGGATAGTGGGAGGCAGTTCAGTTTATAAGGAAGCCATGAACAAGCCAGGCCATATTAG
ACTTTTTGTGACAAGGATCATGAAAGAATTTGAAAGTGACACATTTTTCCCAGAAATTGA
CTTGGAAAAATATAAACTTCTCTCAGAATGTTCAGGAGTTCCTTCTGATGTCCAGGAAGA
GAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAATGTGAAAGTGTTTT
CTGACCTATTTCACACCCTCTCCCTCTCCCCAAAATGTATTTTTTTGTTGTTGTTGACTT
TGGACCTATGGATAACTATTTCAAAGCAGTTTGCTTTTATTTGCCATTCATCTAAACAAG
ACATGTATCAGATACCCTTTGTGAAACATTTCTTGCTCTGTCTGAATGCCCATCAAGAGC
CAGGAATAGGTTACCAGCACCTGCCTAGAGTAGAATATCTACTATCTACCAAGACAACCC
AGAGTGGGAGAGTCCCCTGGCGGCATGAGTTGAAACCAGGGCCTGTAGAGATAGGGGCTA
GACAGATGGGTCCAAGGGTGAGAAATAGATTTTACACAGAAGAGCTAGAACTCAGTTATT
AAAATTAGAAGAAAAGAGGGACTATGAATTATTCTATGTGTATCACACATCTGAGAAAAA
TTCTGTTCATTCACACCAGGGAATCTAAGTTTCGAATTCGAGGATAGTCCTTGGATGCAG
TAAGGAGGCAGGTTTGAGACAGCCTTTTCAGTGGTTAAAAGGGTAGATCTGAGACCTTTA
AAAATGTTTAGCAAAGATTTACATGATTATATATCTAGAAAAAAATAGCATTTTCTGCCT
TATAAATTCGTACAACCTTTTTAGAGTGTAAGTTAGCAACATCAAGTAAGATTCAACATA
CTCTTCAGAGTTCCCATTGTGGCACAGTGGAAACGAATCCAGACTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCAGTTCCCGGGTGTCTGCGGGCGCGAGCACGTCGCGACCCTGCGGTGCGCCGG
GATAGGGGGCGTGGTGAGGGCGGGGTCTCTCCTGCACAAATAGGAGTGGGGGGGGCGGGG
TGAGCGAAATTTCGCGCCAAGCTTTGGGGGAATCCCGGTGTTGGTGTAGCCAGTTGTCTC
GAAAGTGTTTACAGCCGCCGACATGGTTCGTCCGCTAAACTGCATCGTTGCTGTGTCCCA
GAACATGGGCATTGGCAAGAACGGGGACCTGCCCTGGCCCCCGCTCAGGAACGAATACAA
ATATTTCCAAAGAATGACCACAACCTCTTCAGTAGAAGGCAAACAGAATTTGGTGATTAT
GGGTAGGAAGACCTGGTTCTCCATTCCGGAGAAGAATCGACCTTTAAAGGACAGAATTAA
TATAGTTCTCAGTAGAGAACTCAAGGAACCTCCACAGGGAGCTCATTTTCTTGCCAAAAG
TCTGGATGATGCCTTAAAACTTACTGAGCAGCCAGAATTAAAAAATAAAGTGGACATGGT
TTGGATAGTGGGAGGCAGTTCAGTTTATAAGGAAGCCATGAACAAGCCAGGCCATATTAG
ACTTTTTGTGACAAGGATCATGAAAGAATTTGAAAGTGACACATTTTTCCCAGAAATTGA
CTTGGAAAAATATAAACTTCTCTCAGAATGTTCAGGAGTTCCTTCTGATGTCCAGGAAGA
GAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAATGTGAAAGTGTTTT
CTGACCTATTTCACACCCTCTCCCTCTCCCCAAAATGTATTTTTTTGTTGTTGTTGACTT
TGGACCTATGGATAACTATTTCAAAGCAGTTTGCTTTTATTTGCCATTCATCTAAACAAG
ACATGTATCAGATACCCTTTGTGAAACATTTCTTGCTCTGTCTGAATGCCCATCAAGAGC
CAGGAATAGGTTACCAGCACCTGCCTAGAGTAGAATATCTACTATCTACCAAGACAACCC
AGAGTGGGAGAGTCCCCTGGCGGCATGAGTTGAAACCAGGGCCTGTAGAGATAGGGGCTA
GACAGATGGGTCCAAGGGTGAGAAATAGATTTTACACAGAAGAGCTAGAACTCAGTTATT
AAAATTAGAAGAAAAGAGGGACTATGAATTATTCTATGTGTATCACACATCTGAGAAAAA
TTCTGTTCATTCACACCAGGGAATCTAAGTTTCGAATTCGAGGATAGTCCTTGGATGCAG
TAAGGAGGCAGGTTTGAGACAGCCTTTTCAGTGGTTAAAAGGGTAGATCTGAGACCTTTA
AAAATGTTTAGCAAAGATTTACATGATTATATATCTAGAAAAAAATAGCATTTTCTGCCT
TATAAATTCGTACAACCTTTTTAGAGTGTAAGTTAGCAACATCAAGTAAGATTCAACATA
CTCTTCAGAGTTCCCATTGTGGCACAGTGGAAACGAATCCAGACTAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|66093|pir||RDPGD

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|66093|pir||RDPGD

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-480, + strand, RNAz p=0.870537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-480, + strand, RNAz p=0.870537

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               123-893, gnl|bosTau2|chr10 (49141550-49142319)
               

               
               123-893, gnl|Hg17|chr18 (22005277-22004549)
               

               
               123-893, gnl|Mm7|chr9 (31469871-31469148)
               


               
               1328-1444, gnl|bosTau2|chr10 (49143119-49143230)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-893, gnl|bosTau2|chr10 (49141550-49142319)
               

               
               123-893, gnl|Hg17|chr18 (22005277-22004549)
               

               
               123-893, gnl|Mm7|chr9 (31469871-31469148)
               


               
               1328-1444, gnl|bosTau2|chr10 (49143119-49143230)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               elu (0.385356)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               pty (0.285429)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               pty (0.285429)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	123-893, gnl\|bosTau2\|chr10 (49141550-49142319)
	123-893, gnl\|Hg17\|chr18 (22005277-22004549)
	123-893, gnl\|Mm7\|chr9 (31469871-31469148)

	1328-1444, gnl\|bosTau2\|chr10 (49143119-49143230)

	elu (0.385356)
	eli (0.303628)
	lun (0.300978)
	pty (0.285429)
	thg (0.253582)
	tra (0.246184)
	pgl (0.236967)
	ecc (0.23007)
	fli (0.202881)
	nlu (0.191681)
	sag (0.182715)
	fty (0.17584)
	sin (0.174948)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	che (0.136314)
	pla (0.133672)
	cov (0.132153)
	ova (0.129132)
	bla (0.124347)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)