Non-Coding RNA Search

Ss1.1-Mixn-0027p17.5

Sequence:


               
               AAACTGGGTGGTGGAACGCAGGCTTTCAGCAACGTGTGGAAGTGAAACTTGTCTCAACTG
CCAAGGCAGGTGATGAGAAGGTTGGTTTGTGAGAGAGGGGTTCTTAGGCCAGGGGATCAG
CAGCAGGAGGGCTGGCAGCAGGTGGACACACAGCGAGGGCGGCAGCAGGGGGTCTGACAG
CAGACAGGGCGGCAGCAAGGCTGGCAGCAGCTGGAGCCACAGCTCTGGGCTAGGCAGCCC
GGCAGGCAGAAGCACGTGGGGTGGTAGCAGGTTCTGCGGCAGTACACGGCGGCACCGCAA
GCCGGCTGGCAGCAGGGCTGGCAGCAGCTGGACTCACAGCACGTGGGCTGGCAACAGGTG
GTCACACAAGTCGGTTTGCAGCAAGTGGTCCTGCAGCAGGTGGTTGGACAGCGAACGGGC
TGGCAGCAGGGCTGGCAGCAGCTGGACTCACAGCAGGTGGGCTGGCAGCAGGTGGTCACA
CAAGTCGGTTTGCAGCAAGTGGTCCTGCAGCAGGTGGTTTGACAGCGAACAGGCTGGCAG
CAGGGCTGGCAGCAGGGCTGTCCGCAGCTGGACCCGCAGCAGGTTTGTCCACAGCTGCTG
GACTCACAGCAGGTGGGCTGGCAGCAGGTGGTCACACAAGTCGGTTTGCGGCAGGTGGTC
CTACAGCAAGTCGTTTGGGTGGCCTCATAGCAAACTGGGGGGCAGCAAGGCCGGCAGCAG
CTGGACTCACAGCACGTGGGCTGGCAGCAAGGGGAGCAGCACGACTGGGTCATGGCGTCA
GCGGTGGAGGGTGGATTCCTGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTGGGTGGTGGAACGCAGGCTTTCAGCAACGTGTGGAAGTGAAACTTGTCTCAACTG
CCAAGGCAGGTGATGAGAAGGTTGGTTTGTGAGAGAGGGGTTCTTAGGCCAGGGGATCAG
CAGCAGGAGGGCTGGCAGCAGGTGGACACACAGCGAGGGCGGCAGCAGGGGGTCTGACAG
CAGACAGGGCGGCAGCAAGGCTGGCAGCAGCTGGAGCCACAGCTCTGGGCTAGGCAGCCC
GGCAGGCAGAAGCACGTGGGGTGGTAGCAGGTTCTGCGGCAGTACACGGCGGCACCGCAA
GCCGGCTGGCAGCAGGGCTGGCAGCAGCTGGACTCACAGCACGTGGGCTGGCAACAGGTG
GTCACACAAGTCGGTTTGCAGCAAGTGGTCCTGCAGCAGGTGGTTGGACAGCGAACGGGC
TGGCAGCAGGGCTGGCAGCAGCTGGACTCACAGCAGGTGGGCTGGCAGCAGGTGGTCACA
CAAGTCGGTTTGCAGCAAGTGGTCCTGCAGCAGGTGGTTTGACAGCGAACAGGCTGGCAG
CAGGGCTGGCAGCAGGGCTGTCCGCAGCTGGACCCGCAGCAGGTTTGTCCACAGCTGCTG
GACTCACAGCAGGTGGGCTGGCAGCAGGTGGTCACACAAGTCGGTTTGCGGCAGGTGGTC
CTACAGCAAGTCGTTTGGGTGGCCTCATAGCAAACTGGGGGGCAGCAAGGCCGGCAGCAG
CTGGACTCACAGCACGTGGGCTGGCAGCAAGGGGAGCAGCACGACTGGGTCATGGCGTCA
GCGGTGGAGGGTGGATTCCTGTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6R637_CAPHI

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6R637_CAPHI

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               381-681, - strand, RNAz p=0.996886
               

               
               523-636, - strand, RNAz p=0.689695

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-681, - strand, RNAz p=0.996886
               

               
               523-636, - strand, RNAz p=0.689695

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               120-798, gnl|bosTau2|chr23 (781797-782515)
               

               
               120-798, gnl|Hg17|chr17 (36636690-36599639)
               

               
               120-798, gnl|Mm7|chr11 (99973659-99966984)
               


               
               319-774, gnl|bosTau2|chr19 (33501795-33501331)
               

               
               319-774, gnl|Hg17|chr17 (36515723-36515256)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-798, gnl|bosTau2|chr23 (781797-782515)
               

               
               120-798, gnl|Hg17|chr17 (36636690-36599639)
               

               
               120-798, gnl|Mm7|chr11 (99973659-99966984)
               


               
               319-774, gnl|bosTau2|chr19 (33501795-33501331)
               

               
               319-774, gnl|Hg17|chr17 (36515723-36515256)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (1.28747)
               

               
               ski (0.29347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.28747)
               

               
               ski (0.29347)

	381-681, - strand, RNAz p=0.996886
	523-636, - strand, RNAz p=0.689695

	120-798, gnl\|bosTau2\|chr23 (781797-782515)
	120-798, gnl\|Hg17\|chr17 (36636690-36599639)
	120-798, gnl\|Mm7\|chr11 (99973659-99966984)

	319-774, gnl\|bosTau2\|chr19 (33501795-33501331)
	319-774, gnl\|Hg17\|chr17 (36515723-36515256)