Non-Coding RNA Search

Ss1.1-Mixn-0028a09.5

Sequence:


               
               CACATCGTGGCCATTGGGGGCCTTGGAAACCAGCCATGCCCTCTGGGCTCAGTAGAAGGC
TTCAGCCTTGCACGGCGGCGTTGGGAAGCACTGCCTGCCATGCCCACGGCCCGCTGCTCT
TGCTCTAGTCTGCAGGCTGGACCCTGGCTGTTTGCTATTGGGGGTGTGGCCCAGGGTCCC
AGTCAAGCTGTGGAGGCACTGTGTCTGCGGGATGGGGTCTGAATGTTGATGGGACCTGTT
CACTGATGCAGCTCAGTGACAGAAGCAGACATCTGTGGTTCTTCTGCTGCTGAGGAAGCT
CACTGTGGCTCTGTGGGATGAGGTGGGGCACTTGAGACATTGTCTTGGGGACTTGAGGGT
TGCCTTCATCTTTAGTGCAGGACACATATACGCTTACACCCTTTACTCCCGTTCATTCAT
GGACCATGCCCAGCTCCACCCTTGCTCTGGAACCTACTGGGCCAGAAGTGGGAGAGGGCA
GAGCTGGCCTCATGCTCCACAAGGTCAGTGCCTACCTGGAGTATATCAGGCCCACCCCAA
TGGCTGTTCCTGAAAAATCCTGTCAGCCTGCCTTGAAGGCCCCTTTGGACCCAGGAGAGT
TCAGAGAGGGTGGGTACACAGAGGGGTGGGGGAGTGGATGCAAGGACCTTCAGAGTGCTA
GAAGAATGATGGCTTGGGCCCTATACACTGCTGGCTGTGTGACCTTGGGCAAGTCATTTC
ACCTCTCTGTGCCTCAGCATCCACATCTGTAAATGGGGATCTCTGAAACCTTCCTACCCT
ACCTACCTCACAGGGCTGTTGTGAGGATCCAGGAAGTTCAGATGTGGAAGTAAAAGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATCGTGGCCATTGGGGGCCTTGGAAACCAGCCATGCCCTCTGGGCTCAGTAGAAGGC
TTCAGCCTTGCACGGCGGCGTTGGGAAGCACTGCCTGCCATGCCCACGGCCCGCTGCTCT
TGCTCTAGTCTGCAGGCTGGACCCTGGCTGTTTGCTATTGGGGGTGTGGCCCAGGGTCCC
AGTCAAGCTGTGGAGGCACTGTGTCTGCGGGATGGGGTCTGAATGTTGATGGGACCTGTT
CACTGATGCAGCTCAGTGACAGAAGCAGACATCTGTGGTTCTTCTGCTGCTGAGGAAGCT
CACTGTGGCTCTGTGGGATGAGGTGGGGCACTTGAGACATTGTCTTGGGGACTTGAGGGT
TGCCTTCATCTTTAGTGCAGGACACATATACGCTTACACCCTTTACTCCCGTTCATTCAT
GGACCATGCCCAGCTCCACCCTTGCTCTGGAACCTACTGGGCCAGAAGTGGGAGAGGGCA
GAGCTGGCCTCATGCTCCACAAGGTCAGTGCCTACCTGGAGTATATCAGGCCCACCCCAA
TGGCTGTTCCTGAAAAATCCTGTCAGCCTGCCTTGAAGGCCCCTTTGGACCCAGGAGAGT
TCAGAGAGGGTGGGTACACAGAGGGGTGGGGGAGTGGATGCAAGGACCTTCAGAGTGCTA
GAAGAATGATGGCTTGGGCCCTATACACTGCTGGCTGTGTGACCTTGGGCAAGTCATTTC
ACCTCTCTGTGCCTCAGCATCCACATCTGTAAATGGGGATCTCTGAAACCTTCCTACCCT
ACCTACCTCACAGGGCTGTTGTGAGGATCCAGGAAGTTCAGATGTGGAAGTAAAAGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34785545|gb|AAH13110.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34785545|gb|AAH13110.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               678-837, - strand, RNAz p=0.940351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               678-837, - strand, RNAz p=0.940351

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-840, gnl|bosTau2|chr22 (37697720-37698569)
               

               
               25-840, gnl|Hg17|chr3 (49188041-49188912)
               

               
               25-840, gnl|Mm7|chr9 (108181799-108180956)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-840, gnl|bosTau2|chr22 (37697720-37698569)
               

               
               25-840, gnl|Hg17|chr3 (49188041-49188912)
               

               
               25-840, gnl|Mm7|chr9 (108181799-108180956)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

	25-840, gnl\|bosTau2\|chr22 (37697720-37698569)
	25-840, gnl\|Hg17\|chr3 (49188041-49188912)
	25-840, gnl\|Mm7\|chr9 (108181799-108180956)