Non-Coding RNA Search

Ss1.1-Mixn-0028a10.5

Sequence:


               
               AATCAACTGTAATAAAAAAAAATTTTTTTTAACTATCTGAAAAAAAAATGATAGCACCTG
TTCTATTTATATGTCTTTGGGAAAGAATCATTTTTGGCTTAAAGAAGATTTAATCTCAAT
TTATGTTAAAAAGTTGGATATGCCTAAATCTTTACTGATAAACACATTCAAGCATACTAC
AGATGTCATTTTTATTTACTTATGGATGTAAATAATTTTCAATGAAGACAAAAATGATTT
GAATTTAATCTCAAAATTTAAACATAACCCTAATTAGTGCATTGGCTGAAGTTTTAGACT
TATGAAAAATATCAGTTTATAGGTAGTTCTGTGTGTTCGATAGCATGTGGGCAGGCATAG
TGAATGGAGATTGAGGTATATTTAAATATTACAAGGGTGATTCATATTGAAGGTGAAAAA
ACTGGCAGTAAACTGAATAGCAAGTTACAACAGGAATGGGAGAAAGACCACAGGTCTTCT
ATAAATAGGTAGAACCTGCTAAAATAGAAAATTAGATTGAAAAAGCTGTTCCTTTTACTA
TTCAGTGACAGTTGGGTCAGTGTTAACATAGGTGCAGGCTAAGTATAAAACTGTCTTTCA
GTTATGACAGAGGTGTTTCAGGAGCTGAATTGGACTCGAAAATCCCCCAGTCCAGGAACT
GATGTGGAAGAAAATCAGCATTTTCATGTTGGTAAAAATTAAGATAACGATTGTTTTGTT
TATAAACTGTACCTTAAAATATTAACTGCTTTTTGAGAAACCAATAAAAAGTTTCTTGTG
AAATGTTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAACTGTAATAAAAAAAAATTTTTTTTAACTATCTGAAAAAAAAATGATAGCACCTG
TTCTATTTATATGTCTTTGGGAAAGAATCATTTTTGGCTTAAAGAAGATTTAATCTCAAT
TTATGTTAAAAAGTTGGATATGCCTAAATCTTTACTGATAAACACATTCAAGCATACTAC
AGATGTCATTTTTATTTACTTATGGATGTAAATAATTTTCAATGAAGACAAAAATGATTT
GAATTTAATCTCAAAATTTAAACATAACCCTAATTAGTGCATTGGCTGAAGTTTTAGACT
TATGAAAAATATCAGTTTATAGGTAGTTCTGTGTGTTCGATAGCATGTGGGCAGGCATAG
TGAATGGAGATTGAGGTATATTTAAATATTACAAGGGTGATTCATATTGAAGGTGAAAAA
ACTGGCAGTAAACTGAATAGCAAGTTACAACAGGAATGGGAGAAAGACCACAGGTCTTCT
ATAAATAGGTAGAACCTGCTAAAATAGAAAATTAGATTGAAAAAGCTGTTCCTTTTACTA
TTCAGTGACAGTTGGGTCAGTGTTAACATAGGTGCAGGCTAAGTATAAAACTGTCTTTCA
GTTATGACAGAGGTGTTTCAGGAGCTGAATTGGACTCGAAAATCCCCCAGTCCAGGAACT
GATGTGGAAGAAAATCAGCATTTTCATGTTGGTAAAAATTAAGATAACGATTGTTTTGTT
TATAAACTGTACCTTAAAATATTAACTGCTTTTTGAGAAACCAATAAAAAGTTTCTTGTG
AAATGTTTTGTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               61-789, gnl|bosTau2|chr6 (37579844-37580565)
               

               
               61-789, gnl|Hg17|chr4 (54168927-54169672)
               

               
               61-789, gnl|Mm7|chr5 (74016876-74017560)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-789, gnl|bosTau2|chr6 (37579844-37580565)
               

               
               61-789, gnl|Hg17|chr4 (54168927-54169672)
               

               
               61-789, gnl|Mm7|chr5 (74016876-74017560)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sug (0.381874)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	61-789, gnl\|bosTau2\|chr6 (37579844-37580565)
	61-789, gnl\|Hg17\|chr4 (54168927-54169672)
	61-789, gnl\|Mm7\|chr5 (74016876-74017560)

	sug (0.381874)
	gul (0.177588)
	fbs (0.175346)
	ova (0.129132)
	ret (0.128733)