Non-Coding RNA Search

Ss1.1-Mixn-0028a16.5

Sequence:


               
               GGGTATTTATTCTTTGTTTAGTTGTAGTCAGAGCTCTATCCCATGTAAATAGTCAAAGCT
GAAAGTTTTTGAGAAGTCATTACATCCCTCTTCAACAAGCATTTGTTAAAGGGATCCTAT
ATGCATGGTCTGATGCTGGGAATTCTGATTTCATTAATCAGAGTTCCTTTCTCTAGGGAA
AGAATTAATTTGAAAGTGAAACCTGAGAACATACCCAAGAACATAATCAGCCACATAGGT
TCATTAATGAAATGAAGTGTTTATAATATAAAGCTTCAGTACCGCTGTCTCTGAAGCAGT
CTATTTTTTCAGGAAATTCATCTCTGTCAGGAAAGTTAGGAAGGTGGGGGAGAAGCAGGA
GGCAGGAAAAATTTTAGTGCCACTGCTACTTTGCTCACCCATGTATCCAAAAATGTGAGA
TGTGTGGCTGTAATGATGATACTGATTTTCCTTCACAATGAATATGCCAGCAAGCATACA
TCTAGGGGAATATTGTCTTTCAAAGTAGATAGTTTGGGAAATTATTCCTTTACTTTAGCG
ATGTATCACTGTTAAAAATGTCTGTGAAAATCTTTCTTAATAGCTTTACAAGCTGCTGAG
GAAAATCAGTGTCATTGTTTAAAGTCGCATCTTATGTTTTAACTACCACTTTATTGAACA
GGGTTAAACCTGAATAATTTTGGCTGTTGAGCTAATAGTGTAAATAAAACAAGCCTGCCT
TTATAAAACACCAATTTTTAAAATTAATAATTAAGCAGTTTTTAAAATTATGCCTATAAA
CCTGTGTATAATCAGTTGGCAGTCCCCAAATTTGGGGTGTACAAGGAATTAAGCAGCCCA
GAATGTACATTACGTGGAGATACGGAAAAGTCATGCTTGACTTCAGATGAGCAGGGTTGG
TGTTTTATGTGGCATTAAGGCAATGAACTTCTACCACAATTCCTACACTAATACTGAATT
TATGAATCCAAATTAAATCTCACTAGGTTGGAATCAGATTAATTTGGTGGGAGACCATGA
TAGATAAGACCAGTCGGGGTGTATGCTTTATTTCTTGTTGGCCAACAGCTTCTTTCTAAT
GTTTTGTGAAGTATTAAGTGTCCTATATAATGGTGCTTTTATGGTTATTAAAATTATATA
CGGTATTGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTATTTATTCTTTGTTTAGTTGTAGTCAGAGCTCTATCCCATGTAAATAGTCAAAGCT
GAAAGTTTTTGAGAAGTCATTACATCCCTCTTCAACAAGCATTTGTTAAAGGGATCCTAT
ATGCATGGTCTGATGCTGGGAATTCTGATTTCATTAATCAGAGTTCCTTTCTCTAGGGAA
AGAATTAATTTGAAAGTGAAACCTGAGAACATACCCAAGAACATAATCAGCCACATAGGT
TCATTAATGAAATGAAGTGTTTATAATATAAAGCTTCAGTACCGCTGTCTCTGAAGCAGT
CTATTTTTTCAGGAAATTCATCTCTGTCAGGAAAGTTAGGAAGGTGGGGGAGAAGCAGGA
GGCAGGAAAAATTTTAGTGCCACTGCTACTTTGCTCACCCATGTATCCAAAAATGTGAGA
TGTGTGGCTGTAATGATGATACTGATTTTCCTTCACAATGAATATGCCAGCAAGCATACA
TCTAGGGGAATATTGTCTTTCAAAGTAGATAGTTTGGGAAATTATTCCTTTACTTTAGCG
ATGTATCACTGTTAAAAATGTCTGTGAAAATCTTTCTTAATAGCTTTACAAGCTGCTGAG
GAAAATCAGTGTCATTGTTTAAAGTCGCATCTTATGTTTTAACTACCACTTTATTGAACA
GGGTTAAACCTGAATAATTTTGGCTGTTGAGCTAATAGTGTAAATAAAACAAGCCTGCCT
TTATAAAACACCAATTTTTAAAATTAATAATTAAGCAGTTTTTAAAATTATGCCTATAAA
CCTGTGTATAATCAGTTGGCAGTCCCCAAATTTGGGGTGTACAAGGAATTAAGCAGCCCA
GAATGTACATTACGTGGAGATACGGAAAAGTCATGCTTGACTTCAGATGAGCAGGGTTGG
TGTTTTATGTGGCATTAAGGCAATGAACTTCTACCACAATTCCTACACTAATACTGAATT
TATGAATCCAAATTAAATCTCACTAGGTTGGAATCAGATTAATTTGGTGGGAGACCATGA
TAGATAAGACCAGTCGGGGTGTATGCTTTATTTCTTGTTGGCCAACAGCTTCTTTCTAAT
GTTTTGTGAAGTATTAAGTGTCCTATATAATGGTGCTTTTATGGTTATTAAAATTATATA
CGGTATTGCTTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-624, gnl|bosTau2|chr9 (7121391-7122020)
               

               
               2-624, gnl|Hg17|chr13 (31875022-31874401)
               

               
               2-624, gnl|Mm7|chr5 (149505770-149505222)
               


               
               644-1152, gnl|bosTau2|chr9 (7122128-7122621)
               

               
               644-1152, gnl|Hg17|chr13 (31874383-31873871)
               

               
               644-1152, gnl|Mm7|chr5 (149505159-149504730)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-624, gnl|bosTau2|chr9 (7121391-7122020)
               

               
               2-624, gnl|Hg17|chr13 (31875022-31874401)
               

               
               2-624, gnl|Mm7|chr5 (149505770-149505222)
               


               
               644-1152, gnl|bosTau2|chr9 (7122128-7122621)
               

               
               644-1152, gnl|Hg17|chr13 (31874383-31873871)
               

               
               644-1152, gnl|Mm7|chr5 (149505159-149504730)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               tra (0.246184)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	2-624, gnl\|bosTau2\|chr9 (7121391-7122020)
	2-624, gnl\|Hg17\|chr13 (31875022-31874401)
	2-624, gnl\|Mm7\|chr5 (149505770-149505222)

	644-1152, gnl\|bosTau2\|chr9 (7122128-7122621)
	644-1152, gnl\|Hg17\|chr13 (31874383-31873871)
	644-1152, gnl\|Mm7\|chr5 (149505159-149504730)

	tra (0.246184)
	cty (0.20816)
	sag (0.182715)
	mgm (0.180343)
	mga (0.160205)
	bfe (0.149858)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	eje (0.0988338)
	ldo (0.0970026)