Non-Coding RNA Search

Ss1.1-Mixn-0028a17.5

Sequence:


               
               AGGACACCCATGTTAGGCAGCTCTGACCGGGACAGGCTTGTGGCCAAGTAAAGGCGGTGA
GGTCTGTCTCCACTGGCCCCCTCCCCTTCTCCAAACCCCTCTCCAAGCAAAAGCCTTAAG
ACGTTGTCCCCTTGTTCACTGTTACGTCTCTGACATTTTGGCGAAAGGCTTGGCCCAAAA
AGCTGCTCAAGCTGATCTCCTGATGGTGGACGTTCGGGCACCCTGACAGTTTTACGTCGA
GGTGGGTGACTCAGCACGACTTGTAGGCAGCACCTCCACACCACCTCCTTGTAAAACTGC
CCGTGCCTCTGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTTTGCATGTTGAAGCTG
GAGGCGTGTTTGGAGGAGTGTGTGGGAGCTTGTCTGTGTATGCCTCTGGACCTGGACAAA
GAGGGACAGGGTCTCACCCACTGAATCCCTTTTGGCTGCTGGAAGGGCCTAGGCAGGCTC
ATCTAAGGACCCAGCCCAGGTCGTCAGCGTGGTGCCTGAAGGGTTCATCTGTTCCCATGT
CAACCAGGGTCAGTGCAGTGTCACTGAGGACTCAGTGGCTGACCCGGACTCTTCCTGTCC
CTTTGCTGTTTCTAGCACCTGGCTTACTTCCGGCACACAGTAAGCGCTCAATAAATGTCT
GCTGTGAATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACACCCATGTTAGGCAGCTCTGACCGGGACAGGCTTGTGGCCAAGTAAAGGCGGTGA
GGTCTGTCTCCACTGGCCCCCTCCCCTTCTCCAAACCCCTCTCCAAGCAAAAGCCTTAAG
ACGTTGTCCCCTTGTTCACTGTTACGTCTCTGACATTTTGGCGAAAGGCTTGGCCCAAAA
AGCTGCTCAAGCTGATCTCCTGATGGTGGACGTTCGGGCACCCTGACAGTTTTACGTCGA
GGTGGGTGACTCAGCACGACTTGTAGGCAGCACCTCCACACCACCTCCTTGTAAAACTGC
CCGTGCCTCTGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTTTGCATGTTGAAGCTG
GAGGCGTGTTTGGAGGAGTGTGTGGGAGCTTGTCTGTGTATGCCTCTGGACCTGGACAAA
GAGGGACAGGGTCTCACCCACTGAATCCCTTTTGGCTGCTGGAAGGGCCTAGGCAGGCTC
ATCTAAGGACCCAGCCCAGGTCGTCAGCGTGGTGCCTGAAGGGTTCATCTGTTCCCATGT
CAACCAGGGTCAGTGCAGTGTCACTGAGGACTCAGTGGCTGACCCGGACTCTTCCTGTCC
CTTTGCTGTTTCTAGCACCTGGCTTACTTCCGGCACACAGTAAGCGCTCAATAAATGTCT
GCTGTGAATGGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               207-314, - strand, RNAz p=0.585691
               

               
               415-522, - strand, RNAz p=0.743903

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-314, - strand, RNAz p=0.585691
               

               
               415-522, - strand, RNAz p=0.743903

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               15-672, gnl|bosTau2|chr19 (17228208-17227557)
               

               
               15-672, gnl|canFam2|chr9 (49056321-49056821)
               

               
               15-672, gnl|dasNov1|scaffold_10129 (18054-17487)
               

               
               15-672, gnl|hg17|chr17 (1419191-1419754)
               

               
               15-672, gnl|Hg17|chr17 (1419935-1419311)
               

               
               15-672, gnl|loxAfr1|scaffold_45135 (10970-10571)
               

               
               15-672, gnl|mm7|chr11 (75659241-75658682)
               

               
               15-672, gnl|Mm7|chr11 (75658514-75659143)
               

               
               15-672, gnl|oryCun1|scaffold_210283 (19165-18693)
               

               
               15-672, gnl|panTro1|chr19 (1560915-1561478)
               

               
               15-672, gnl|rheMac2|chr16 (1367863-1368447)
               

               
               15-672, gnl|rn3|chr10 (62911081-62910549)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-672, gnl|bosTau2|chr19 (17228208-17227557)
               

               
               15-672, gnl|canFam2|chr9 (49056321-49056821)
               

               
               15-672, gnl|dasNov1|scaffold_10129 (18054-17487)
               

               
               15-672, gnl|hg17|chr17 (1419191-1419754)
               

               
               15-672, gnl|Hg17|chr17 (1419935-1419311)
               

               
               15-672, gnl|loxAfr1|scaffold_45135 (10970-10571)
               

               
               15-672, gnl|mm7|chr11 (75659241-75658682)
               

               
               15-672, gnl|Mm7|chr11 (75658514-75659143)
               

               
               15-672, gnl|oryCun1|scaffold_210283 (19165-18693)
               

               
               15-672, gnl|panTro1|chr19 (1560915-1561478)
               

               
               15-672, gnl|rheMac2|chr16 (1367863-1368447)
               

               
               15-672, gnl|rn3|chr10 (62911081-62910549)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eli (0.303628)
               

               
               cga (0.279096)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.303628)
               

               
               cga (0.279096)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	207-314, - strand, RNAz p=0.585691
	415-522, - strand, RNAz p=0.743903

	15-672, gnl\|bosTau2\|chr19 (17228208-17227557)
	15-672, gnl\|canFam2\|chr9 (49056321-49056821)
	15-672, gnl\|dasNov1\|scaffold_10129 (18054-17487)
	15-672, gnl\|hg17\|chr17 (1419191-1419754)
	15-672, gnl\|Hg17\|chr17 (1419935-1419311)
	15-672, gnl\|loxAfr1\|scaffold_45135 (10970-10571)
	15-672, gnl\|mm7\|chr11 (75659241-75658682)
	15-672, gnl\|Mm7\|chr11 (75658514-75659143)
	15-672, gnl\|oryCun1\|scaffold_210283 (19165-18693)
	15-672, gnl\|panTro1\|chr19 (1560915-1561478)
	15-672, gnl\|rheMac2\|chr16 (1367863-1368447)
	15-672, gnl\|rn3\|chr10 (62911081-62910549)

	eli (0.303628)
	cga (0.279096)
	fbs (0.175346)
	cli (0.152812)
	cly (0.120642)
	jej (0.0989218)