Ss1.1-Mixn-0028a22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAAGA CAATGAAATATTTGACAATGCAATGGCTGGAGTCTGGATTAAGACAGATAGTAATCCTAC ACTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGG TCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAATGCTCAAGCAGGTGTTCTCATCAG CACTAACAGTCATCCAGTCTTGAGGAAAAACAGAATATTTGATGGATTTGCTGCAGGTAT TGAAATTACAAATCATGCAACTGCAACACTAGAAGGCAATCAGATTTTTAACAACCGTTT CGGAGGCTTGTTTTTAGCATCAGGTGTTAATGTGACAATGAAAGATAACAAAATAATGAA CAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGCCAGTGTTTATATAAAATATCAAG TTATACCAGCTACCCCATGCATGATTTCTACAGATGTCACACTTGTAACACCACAGATCG AAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAATTTAT TAGACATGATAGGTTTTTTTGTGACTGTGGTGCTGGAACACTGTCTAATCCTTGTACATT AGCTGGTGAGCCTACACACGATACAGATACACTATATGACTCTGCACCACCTATAGAATC TAATACATTGCAGCACAACTGAATTCCTTCCCTAAGGAAAAAGTCCTGCCATTCTAACAT CGTAACTTAAAACATTTTTTTGGAAGATTTAAGATATTTGCCCATGCTACAGGAAGAGAC TGTATTAAAAATGGATACACGAGGTCAGTTGACACTATGAAGCTCAAGCTACCAAAAAGA AAGTGGCAATATATTGACTCAGGATCTCAAAGCTGGGTGTTTTAGCATTACTGTGTAAAG ACTTTTGAAGGGACAGAAGTGAAGAAAATAAGCTGCAATTTTGTACAGATACCAACTTCT GAAAAAAAGCTGGTGTTTTTACAACTAGCATTGAATGCAGTCCAATTTGCAGTAGTACTC TCTTCAATAGACAAGCAGCTTTGTTGCTGCCTTTATGGACGTGGGTACCAATTGCTTTTG TAATATGGTAAAAAAAAAAAATGTGAGCTAGCACTTCTGCGTTTCTTTTGATTTTTTTAA CATGTATTCAGATTGAGAAATATGATTTTAATGCTTTAATCTCATGTAGTTTGTTTTTAA TTTCAAGCAAAATCTTATTGTACTTGAATGTGCCCTGTTTTGTTAGCACACCTAGACTTG CTGTAACTGTACTCATGTCCCAGTATGTACGTTCTTTCTATGAAAGAGAAAACACTAATC TTAAATTATATCCAGCAATGTTTCTGGTATCCTTTAAGAAAAAGTTATTATTCCCTTCCC TGTGCAGCATTCAAAATCACCCTAGAAAAAGTGAGTGTTTTAATGAGACTTCCTAGGAAG GGATGCACTGTAAAACAAAAGTATTCTTGTAACTCAGTTTTGTGAAAGGTAAAAACTACT ATGTTTTAAAAGTACACTTTAGAAAGTCTCTTCAAAACAGTCCTGTATTTGAACTCTGTT CATAGTTTTTTTTTGAACAGTCTAGACAAACTGCTGGAAATTAAAACAATTTCCCGCATT AAGCTGAGACAAGTATATATACAGCCCTATACAGTTTCATAGTCCCCTCCCCATTTATGT GTATTGGTGACAGTGGGTATAAACAGCCTGAAAGTGTATGCATGTACCATAACATCTAGA CTTAATATATTGTGGAGTATTCAATAACCATTATGTAGAAGGTAGATAAGAATTAAAAGG GTTTAATTTCCTAGAAAGAAAATGGAAAAATGGTCATTTTTAAAAAATAAAGTTTATTAG ATCATAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAAGA CAATGAAATATTTGACAATGCAATGGCTGGAGTCTGGATTAAGACAGATAGTAATCCTAC ACTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGG TCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAATGCTCAAGCAGGTGTTCTCATCAG CACTAACAGTCATCCAGTCTTGAGGAAAAACAGAATATTTGATGGATTTGCTGCAGGTAT TGAAATTACAAATCATGCAACTGCAACACTAGAAGGCAATCAGATTTTTAACAACCGTTT CGGAGGCTTGTTTTTAGCATCAGGTGTTAATGTGACAATGAAAGATAACAAAATAATGAA CAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGCCAGTGTTTATATAAAATATCAAG TTATACCAGCTACCCCATGCATGATTTCTACAGATGTCACACTTGTAACACCACAGATCG AAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAATTTAT TAGACATGATAGGTTTTTTTGTGACTGTGGTGCTGGAACACTGTCTAATCCTTGTACATT AGCTGGTGAGCCTACACACGATACAGATACACTATATGACTCTGCACCACCTATAGAATC TAATACATTGCAGCACAACTGAATTCCTTCCCTAAGGAAAAAGTCCTGCCATTCTAACAT CGTAACTTAAAACATTTTTTTGGAAGATTTAAGATATTTGCCCATGCTACAGGAAGAGAC TGTATTAAAAATGGATACACGAGGTCAGTTGACACTATGAAGCTCAAGCTACCAAAAAGA AAGTGGCAATATATTGACTCAGGATCTCAAAGCTGGGTGTTTTAGCATTACTGTGTAAAG ACTTTTGAAGGGACAGAAGTGAAGAAAATAAGCTGCAATTTTGTACAGATACCAACTTCT GAAAAAAAGCTGGTGTTTTTACAACTAGCATTGAATGCAGTCCAATTTGCAGTAGTACTC TCTTCAATAGACAAGCAGCTTTGTTGCTGCCTTTATGGACGTGGGTACCAATTGCTTTTG TAATATGGTAAAAAAAAAAAATGTGAGCTAGCACTTCTGCGTTTCTTTTGATTTTTTTAA CATGTATTCAGATTGAGAAATATGATTTTAATGCTTTAATCTCATGTAGTTTGTTTTTAA TTTCAAGCAAAATCTTATTGTACTTGAATGTGCCCTGTTTTGTTAGCACACCTAGACTTG CTGTAACTGTACTCATGTCCCAGTATGTACGTTCTTTCTATGAAAGAGAAAACACTAATC TTAAATTATATCCAGCAATGTTTCTGGTATCCTTTAAGAAAAAGTTATTATTCCCTTCCC TGTGCAGCATTCAAAATCACCCTAGAAAAAGTGAGTGTTTTAATGAGACTTCCTAGGAAG GGATGCACTGTAAAACAAAAGTATTCTTGTAACTCAGTTTTGTGAAAGGTAAAAACTACT ATGTTTTAAAAGTACACTTTAGAAAGTCTCTTCAAAACAGTCCTGTATTTGAACTCTGTT CATAGTTTTTTTTTGAACAGTCTAGACAAACTGCTGGAAATTAAAACAATTTCCCGCATT AAGCTGAGACAAGTATATATACAGCCCTATACAGTTTCATAGTCCCCTCCCCATTTATGT GTATTGGTGACAGTGGGTATAAACAGCCTGAAAGTGTATGCATGTACCATAACATCTAGA CTTAATATATTGTGGAGTATTCAATAACCATTATGTAGAAGGTAGATAAGAATTAAAAGG GTTTAATTTCCTAGAAAGAAAATGGAAAAATGGTCATTTTTAAAAAATAAAGTTTATTAG ATCATAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 950-1185, - strand, RNAz p=0.987245 | |
| 1301-1449, - strand, RNAz p=0.787484 | |
| 1568-1722, - strand, RNAz p=0.994644 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 950-1185, - strand, RNAz p=0.987245 | |
| 1301-1449, - strand, RNAz p=0.787484 | |
| 1568-1722, - strand, RNAz p=0.994644 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 41-194, gnl|bosTau2|chr11 (19631775-19631928) | |
| 41-194, gnl|canFam2|chr10 (52968858-52969028) | |
| 41-194, gnl|danRer3|chrNA (55386668-55386514) | |
| 41-194, gnl|dasNov1|scaffold_259784 (3983-4120) | |
| 41-194, gnl|echTel1|scaffold_313052 (71219-71046) | |
| 41-194, gnl|fr1|chrUn (25117246-25117085) | |
| 41-194, gnl|galGal2|chr3 (8393884-8393709) | |
| 41-194, gnl|hg17|chr2 (47952007-47952180) | |
| 41-194, gnl|Hg17|chr2 (47952168-47952015) | |
| 41-194, gnl|loxAfr1|scaffold_30408 (11309-11136) | |
| 41-194, gnl|mm7|chr17 (86298464-86298633) | |
| 41-194, gnl|Mm7|chr17 (86298622-86298472) | |
| 41-194, gnl|monDom2|scaffold_1 (7978635-7978795) | |
| 41-194, gnl|oryCun1|scaffold_198524 (45638-45465) | |
| 41-194, gnl|panTro1|chr12 (50009624-50009797) | |
| 41-194, gnl|rheMac2|chr13 (47965330-47965503) | |
| 41-194, gnl|rn3|chr6 (11547408-11547580) | |
| 41-194, gnl|tetNig1|chr17 (3357787-3357947) | |
| 41-194, gnl|xenTro1|scaffold_111 (372060-372230) | |
| 398-513, gnl|bosTau2|chr11 (19636256-19636371) | |
| 398-513, gnl|canFam2|chr10 (52965283-52965414) | |
| 398-513, gnl|danRer3|chrNA (55387865-55387736) | |
| 398-513, gnl|echTel1|scaffold_313052 (74369-74240) | |
| 398-513, gnl|fr1|chrUn (25117835-25117710) | |
| 398-513, gnl|galGal2|chr3 (8397004-8396873) | |
| 398-513, gnl|hg17|chr2 (47947936-47948067) | |
| 398-513, gnl|Hg17|chr2 (47948063-47947948) | |
| 398-513, gnl|mm7|chr17 (86295249-86295378) | |
| 398-513, gnl|Mm7|chr17 (86295373-86295261) | |
| 398-513, gnl|monDom2|scaffold_1 (7976242-7976363) | |
| 398-513, gnl|oryCun1|scaffold_198524 (49136-49005) | |
| 398-513, gnl|panTro1|chr12 (50005555-50005684) | |
| 398-513, gnl|rheMac2|chr13 (47961312-47961443) | |
| 398-513, gnl|rn3|chr6 (11544419-11544547) | |
| 398-513, gnl|tetNig1|chr17 (3357185-3357310) | |
| 398-513, gnl|xenTro1|scaffold_111 (367613-367739) | |
| 610-1927, gnl|bosTau2|chr11 (19637122-19638470) | |
| 610-1927, gnl|Hg17|chr2 (47947040-47945710) | |
| 610-1927, gnl|Mm7|chr17 (86294620-86293301) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-194, gnl|bosTau2|chr11 (19631775-19631928) | |
| 41-194, gnl|canFam2|chr10 (52968858-52969028) | |
| 41-194, gnl|danRer3|chrNA (55386668-55386514) | |
| 41-194, gnl|dasNov1|scaffold_259784 (3983-4120) | |
| 41-194, gnl|echTel1|scaffold_313052 (71219-71046) | |
| 41-194, gnl|fr1|chrUn (25117246-25117085) | |
| 41-194, gnl|galGal2|chr3 (8393884-8393709) | |
| 41-194, gnl|hg17|chr2 (47952007-47952180) | |
| 41-194, gnl|Hg17|chr2 (47952168-47952015) | |
| 41-194, gnl|loxAfr1|scaffold_30408 (11309-11136) | |
| 41-194, gnl|mm7|chr17 (86298464-86298633) | |
| 41-194, gnl|Mm7|chr17 (86298622-86298472) | |
| 41-194, gnl|monDom2|scaffold_1 (7978635-7978795) | |
| 41-194, gnl|oryCun1|scaffold_198524 (45638-45465) | |
| 41-194, gnl|panTro1|chr12 (50009624-50009797) | |
| 41-194, gnl|rheMac2|chr13 (47965330-47965503) | |
| 41-194, gnl|rn3|chr6 (11547408-11547580) | |
| 41-194, gnl|tetNig1|chr17 (3357787-3357947) | |
| 41-194, gnl|xenTro1|scaffold_111 (372060-372230) | |
| 398-513, gnl|bosTau2|chr11 (19636256-19636371) | |
| 398-513, gnl|canFam2|chr10 (52965283-52965414) | |
| 398-513, gnl|danRer3|chrNA (55387865-55387736) | |
| 398-513, gnl|echTel1|scaffold_313052 (74369-74240) | |
| 398-513, gnl|fr1|chrUn (25117835-25117710) | |
| 398-513, gnl|galGal2|chr3 (8397004-8396873) | |
| 398-513, gnl|hg17|chr2 (47947936-47948067) | |
| 398-513, gnl|Hg17|chr2 (47948063-47947948) | |
| 398-513, gnl|mm7|chr17 (86295249-86295378) | |
| 398-513, gnl|Mm7|chr17 (86295373-86295261) | |
| 398-513, gnl|monDom2|scaffold_1 (7976242-7976363) | |
| 398-513, gnl|oryCun1|scaffold_198524 (49136-49005) | |
| 398-513, gnl|panTro1|chr12 (50005555-50005684) | |
| 398-513, gnl|rheMac2|chr13 (47961312-47961443) | |
| 398-513, gnl|rn3|chr6 (11544419-11544547) | |
| 398-513, gnl|tetNig1|chr17 (3357185-3357310) | |
| 398-513, gnl|xenTro1|scaffold_111 (367613-367739) | |
| 610-1927, gnl|bosTau2|chr11 (19637122-19638470) | |
| 610-1927, gnl|Hg17|chr2 (47947040-47945710) | |
| 610-1927, gnl|Mm7|chr17 (86294620-86293301) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| tes (0.623441) | |
| spl (0.429553) | |
| ste (0.405625) | |
| ret (0.3862) | |
| vin (0.332557) | |
| nje (0.33184) | |
| fat (0.294855) | |
| fce (0.271592) | |
| cbl (0.229595) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| nca (0.136874) | |
| pla (0.133672) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| spl (0.429553) | |
| ste (0.405625) | |
| ret (0.3862) | |
| vin (0.332557) | |
| nje (0.33184) | |
| fat (0.294855) | |
| fce (0.271592) | |
| cbl (0.229595) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| nca (0.136874) | |
| pla (0.133672) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ldo (0.0970026) |