Non-Coding RNA Search

Ss1.1-Mixn-0028b02.5

Sequence:


               
               TGGCCAGCCTGAAGGAGCCTGAGGGGGCGGGAGCTAGGAGTGAAGGGTGAGTTGGAGCCG
GAAGTTATTTATTGGGAACCCCTGAAGGGCCTCTGGCTGTGGGAATGGAGAGGGGCTGGC
CATGCCCAGGGCCCCTCCTCTGCCCCTCTCCTTATTCACGAGATTCCCTCCTGGGTGGGT
TTGAAGTAGAAACAACTGTTCGCCTTAGCGCACTTTCCACCCACTCTTGGGGAGCCCCCA
ACACAACCCTCGCCTTTGATCGGAATGTGTACTGTGAAGAGTGGGGGTGGGGAGGGGGGT
CAGCCGGTGCCCTGCCCCCCCCCCCCAGCACTGTCCTAATCCTCCACTCTGAGCTGGGGG
GGGGTAGTCTATGTCCGCTATAGGGGAGGGGATTAGCACCATCTCCCTGTCACCCTTCCC
CAACCAGACTAGCTACAGGGGAGAGGCAGAGCTGGGAAGATCCACCCCATGCCCTGCCCT
GCCTGCCCCAGGGGGACCCCGTCATCCAGAACACCCAGGCCACCCCCATCATGGTGCTAC
AGGCCCTGCCCTGGGGCCCACACACCCCTCGCCAGGAAGCCCTACATCAATAAAGTTCTT
TCTTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCAGCCTGAAGGAGCCTGAGGGGGCGGGAGCTAGGAGTGAAGGGTGAGTTGGAGCCG
GAAGTTATTTATTGGGAACCCCTGAAGGGCCTCTGGCTGTGGGAATGGAGAGGGGCTGGC
CATGCCCAGGGCCCCTCCTCTGCCCCTCTCCTTATTCACGAGATTCCCTCCTGGGTGGGT
TTGAAGTAGAAACAACTGTTCGCCTTAGCGCACTTTCCACCCACTCTTGGGGAGCCCCCA
ACACAACCCTCGCCTTTGATCGGAATGTGTACTGTGAAGAGTGGGGGTGGGGAGGGGGGT
CAGCCGGTGCCCTGCCCCCCCCCCCCAGCACTGTCCTAATCCTCCACTCTGAGCTGGGGG
GGGGTAGTCTATGTCCGCTATAGGGGAGGGGATTAGCACCATCTCCCTGTCACCCTTCCC
CAACCAGACTAGCTACAGGGGAGAGGCAGAGCTGGGAAGATCCACCCCATGCCCTGCCCT
GCCTGCCCCAGGGGGACCCCGTCATCCAGAACACCCAGGCCACCCCCATCATGGTGCTAC
AGGCCCTGCCCTGGGGCCCACACACCCCTCGCCAGGAAGCCCTACATCAATAAAGTTCTT
TCTTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               101-247, - strand, RNAz p=0.999365
               

               
               444-563, - strand, RNAz p=0.969234

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-247, - strand, RNAz p=0.999365
               

               
               444-563, - strand, RNAz p=0.969234

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               101-609, gnl|bosTau2|chr7 (14293563-14293063)
               

               
               101-609, gnl|Hg17|chr19 (8551619-8551136)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-609, gnl|bosTau2|chr7 (14293563-14293063)
               

               
               101-609, gnl|Hg17|chr19 (8551619-8551136)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)

	101-247, - strand, RNAz p=0.999365
	444-563, - strand, RNAz p=0.969234

	101-609, gnl\|bosTau2\|chr7 (14293563-14293063)
	101-609, gnl\|Hg17\|chr19 (8551619-8551136)