Ss1.1-Mixn-0028b08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGGAGGAATCCTTCCTACAGCCAGTAGATGATTACTTTGTGGAGCCCCCACGGGCTG AGGAGGAAGAAGAGGAGGAAAAGGTCCCACCCGCAAGCTCCCACACCCCTGCAGGGGTCA GCAAAGTGACTCCCACCCCGAGGCCCACAGACGGTGTGGATGTGTATTTCGGCATGCCTG GAGAGATCAGTGAGCATGAGGGGTTCCTGCGGGCTAAGATGGACCTGGAGGAGCGCAGGA TGCGCCAGATTAATGAGGTGATGCGTGAATGGGCCATGGCAGACAACCAGTCCAAGAACC TACCTAAAGCCGACAGACAGGCCTTGAACGAGCACTTCCAGTCCATTCTGCAGACCCTGG AGGAGCAGGTGTCTGGTGAGCGACAGCGTCTGGTGGAGACCCATGCCACCCGAGTCATCG CCCTCATCAACGACCAGCGCCGGGCTGCCTTGGAAGGGTTCCTGGCAGCGCTGCAGGGGG ATCCGCCTCAGCCAGAGCGCATCCTGCTGGCCCTGCGGCGCTACCTGCGAGCAGAGCAGA AGGAGCAGAGGCACACGCTGCGACATTACCAGCACGTTGCTGCTGTGGACCCCGAGAAGG CCCAGCAGATGCGCTTCCAGGTGCAGACCCACCTTCAAGTCATCGAGGAACGGATGAATC AGAGCCTGGGGCTGCTTGACCAGAACCCCCTCCTGGCCCAGGAGCTGCGGCCCCAGATCC AGGAACTCCTCCGCTCTGAACACCTGGGTCCCAGTGAATTGGAAGCCCCCGCCCCGGGGG GCAGCAGTGAGGACAAGAGTGGGCTGCAGCCTCTGGACGCCAAGGATGACACCCCCGTGG CCCTTCCAAAAGGGTCCACAGAACAAGATGCTGCATCCTCTGGAAAAGAGAAGCCGACCC CCCAGGAGCAGTACGATCGAAAGGTGAACATGTCGGTTCCAAGGGGTTTTCCTTTCCACT CATCGGAGATTCAGAGGGATGAGCTGGCCCCAGCCGGGACAGGCGTGTCCCGAGAGGCCG TGTCCGGTCTGCTGATCATGGGAGCAGGTGGGGGCTCCCTGATTGTCCTCTCCTTGCTGC TCTTGCGCAGGAAGAAGCCCTACGGGGCCATCAGCCACGGGGTGGTGGAGGTGGACCCCA TGCTGACCCTGGAGGAGCAGCAGCTTCGTGAACTGCAGCGTCATGGCTACGAGAATCCCA CCTACCGCTTCCTGGAGGAACGACCCTGAACCAGCCCCCTTCACCCCTTCGGCTGAGCCC AAACCTTCCCTCTTCCTGGAGCCCCAGAACCCCGACTCCCAGCCTGGAGGGAGGGGGTCT GGAAAAACTTCATTTCACACTTATTGTGAGGAGGCTGGAAATTCTTATTTCCCCTTTCCA ATTCCAAATTCCATCCCTAAGAAACCCCCAGGTAGTCCCAGCCGCCTCCCCACTGGGGAC CTCCTCAGCTTAATTTGTTTTGTATGTTAATTTATTGTCCCTTAAGCTTGGTCCTAGTGT TTGTTGTTCCCTGGAGTCCCCCACTAACATCCCAATAAAAGTCCTCTTCCCCACCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGGAGGAATCCTTCCTACAGCCAGTAGATGATTACTTTGTGGAGCCCCCACGGGCTG AGGAGGAAGAAGAGGAGGAAAAGGTCCCACCCGCAAGCTCCCACACCCCTGCAGGGGTCA GCAAAGTGACTCCCACCCCGAGGCCCACAGACGGTGTGGATGTGTATTTCGGCATGCCTG GAGAGATCAGTGAGCATGAGGGGTTCCTGCGGGCTAAGATGGACCTGGAGGAGCGCAGGA TGCGCCAGATTAATGAGGTGATGCGTGAATGGGCCATGGCAGACAACCAGTCCAAGAACC TACCTAAAGCCGACAGACAGGCCTTGAACGAGCACTTCCAGTCCATTCTGCAGACCCTGG AGGAGCAGGTGTCTGGTGAGCGACAGCGTCTGGTGGAGACCCATGCCACCCGAGTCATCG CCCTCATCAACGACCAGCGCCGGGCTGCCTTGGAAGGGTTCCTGGCAGCGCTGCAGGGGG ATCCGCCTCAGCCAGAGCGCATCCTGCTGGCCCTGCGGCGCTACCTGCGAGCAGAGCAGA AGGAGCAGAGGCACACGCTGCGACATTACCAGCACGTTGCTGCTGTGGACCCCGAGAAGG CCCAGCAGATGCGCTTCCAGGTGCAGACCCACCTTCAAGTCATCGAGGAACGGATGAATC AGAGCCTGGGGCTGCTTGACCAGAACCCCCTCCTGGCCCAGGAGCTGCGGCCCCAGATCC AGGAACTCCTCCGCTCTGAACACCTGGGTCCCAGTGAATTGGAAGCCCCCGCCCCGGGGG GCAGCAGTGAGGACAAGAGTGGGCTGCAGCCTCTGGACGCCAAGGATGACACCCCCGTGG CCCTTCCAAAAGGGTCCACAGAACAAGATGCTGCATCCTCTGGAAAAGAGAAGCCGACCC CCCAGGAGCAGTACGATCGAAAGGTGAACATGTCGGTTCCAAGGGGTTTTCCTTTCCACT CATCGGAGATTCAGAGGGATGAGCTGGCCCCAGCCGGGACAGGCGTGTCCCGAGAGGCCG TGTCCGGTCTGCTGATCATGGGAGCAGGTGGGGGCTCCCTGATTGTCCTCTCCTTGCTGC TCTTGCGCAGGAAGAAGCCCTACGGGGCCATCAGCCACGGGGTGGTGGAGGTGGACCCCA TGCTGACCCTGGAGGAGCAGCAGCTTCGTGAACTGCAGCGTCATGGCTACGAGAATCCCA CCTACCGCTTCCTGGAGGAACGACCCTGAACCAGCCCCCTTCACCCCTTCGGCTGAGCCC AAACCTTCCCTCTTCCTGGAGCCCCAGAACCCCGACTCCCAGCCTGGAGGGAGGGGGTCT GGAAAAACTTCATTTCACACTTATTGTGAGGAGGCTGGAAATTCTTATTTCCCCTTTCCA ATTCCAAATTCCATCCCTAAGAAACCCCCAGGTAGTCCCAGCCGCCTCCCCACTGGGGAC CTCCTCAGCTTAATTTGTTTTGTATGTTAATTTATTGTCCCTTAAGCTTGGTCCTAGTGT TTGTTGTTCCCTGGAGTCCCCCACTAACATCCCAATAAAAGTCCTCTTCCCCACCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1322-1434, - strand, RNAz p=0.845459 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1322-1434, - strand, RNAz p=0.845459 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 125-263, gnl|bosTau2|chr18 (41689882-41690020) | |
| 125-263, gnl|canFam2|chr1 (119688647-119688515) | |
| 125-263, gnl|danRer3|chr15 (39986900-39986781) | |
| 125-263, gnl|dasNov1|scaffold_87721 (585-709) | |
| 125-263, gnl|fr1|chrUn (51285031-51285168) | |
| 125-263, gnl|hg17|chr19 (41055194-41055329) | |
| 125-263, gnl|Hg17|chr19 (41055223-41055361) | |
| 125-263, gnl|mm7|chr7 (27385243-27385120) | |
| 125-263, gnl|Mm7|chr7 (27385224-27385086) | |
| 125-263, gnl|monDom2|scaffold_139 (1963760-1963887) | |
| 125-263, gnl|rheMac2|chr19 (42354196-42354331) | |
| 125-263, gnl|rn3|chr1 (85475008-85474885) | |
| 125-263, gnl|tetNig1|chr8 (6015048-6014953) | |
| 328-491, gnl|bosTau2|chr18 (41691333-41691496) | |
| 328-491, gnl|Hg17|chr19 (41057241-41057404) | |
| 328-491, gnl|Mm7|chr7 (27383756-27383594) | |
| 618-720, gnl|bosTau2|chr18 (41693196-41693298) | |
| 618-720, gnl|canFam2|chr1 (119686079-119685971) | |
| 618-720, gnl|danRer3|chr15 (39982965-39982856) | |
| 618-720, gnl|dasNov1|scaffold_87721 (7188-7296) | |
| 618-720, gnl|echTel1|scaffold_298061 (3651-3543) | |
| 618-720, gnl|fr1|chrUn (51286089-51286196) | |
| 618-720, gnl|hg17|chr19 (41059257-41059365) | |
| 618-720, gnl|Hg17|chr19 (41059256-41059358) | |
| 618-720, gnl|loxAfr1|scaffold_32032 (718-826) | |
| 618-720, gnl|mm7|chr7 (27381711-27381603) | |
| 618-720, gnl|Mm7|chr7 (27381710-27381608) | |
| 618-720, gnl|oryCun1|scaffold_94244 (1182-1290) | |
| 618-720, gnl|panTro1|chr20 (37901570-37901678) | |
| 618-720, gnl|rheMac2|chr19 (42358963-42359071) | |
| 618-720, gnl|rn3|chr1 (85471634-85471526) | |
| 618-720, gnl|tetNig1|chr8 (6014042-6013935) | |
| 721-828, gnl|bosTau2|chr18 (41694217-41694324) | |
| 721-828, gnl|Hg17|chr19 (41060460-41060567) | |
| 721-828, gnl|Mm7|chr7 (27380324-27380217) | |
| 1126-1515, gnl|bosTau2|chr18 (41695534-41695935) | |
| 1126-1515, gnl|Hg17|chr19 (41062080-41062479) | |
| 1126-1515, gnl|Mm7|chr7 (27378826-27378470) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-263, gnl|bosTau2|chr18 (41689882-41690020) | |
| 125-263, gnl|canFam2|chr1 (119688647-119688515) | |
| 125-263, gnl|danRer3|chr15 (39986900-39986781) | |
| 125-263, gnl|dasNov1|scaffold_87721 (585-709) | |
| 125-263, gnl|fr1|chrUn (51285031-51285168) | |
| 125-263, gnl|hg17|chr19 (41055194-41055329) | |
| 125-263, gnl|Hg17|chr19 (41055223-41055361) | |
| 125-263, gnl|mm7|chr7 (27385243-27385120) | |
| 125-263, gnl|Mm7|chr7 (27385224-27385086) | |
| 125-263, gnl|monDom2|scaffold_139 (1963760-1963887) | |
| 125-263, gnl|rheMac2|chr19 (42354196-42354331) | |
| 125-263, gnl|rn3|chr1 (85475008-85474885) | |
| 125-263, gnl|tetNig1|chr8 (6015048-6014953) | |
| 328-491, gnl|bosTau2|chr18 (41691333-41691496) | |
| 328-491, gnl|Hg17|chr19 (41057241-41057404) | |
| 328-491, gnl|Mm7|chr7 (27383756-27383594) | |
| 618-720, gnl|bosTau2|chr18 (41693196-41693298) | |
| 618-720, gnl|canFam2|chr1 (119686079-119685971) | |
| 618-720, gnl|danRer3|chr15 (39982965-39982856) | |
| 618-720, gnl|dasNov1|scaffold_87721 (7188-7296) | |
| 618-720, gnl|echTel1|scaffold_298061 (3651-3543) | |
| 618-720, gnl|fr1|chrUn (51286089-51286196) | |
| 618-720, gnl|hg17|chr19 (41059257-41059365) | |
| 618-720, gnl|Hg17|chr19 (41059256-41059358) | |
| 618-720, gnl|loxAfr1|scaffold_32032 (718-826) | |
| 618-720, gnl|mm7|chr7 (27381711-27381603) | |
| 618-720, gnl|Mm7|chr7 (27381710-27381608) | |
| 618-720, gnl|oryCun1|scaffold_94244 (1182-1290) | |
| 618-720, gnl|panTro1|chr20 (37901570-37901678) | |
| 618-720, gnl|rheMac2|chr19 (42358963-42359071) | |
| 618-720, gnl|rn3|chr1 (85471634-85471526) | |
| 618-720, gnl|tetNig1|chr8 (6014042-6013935) | |
| 721-828, gnl|bosTau2|chr18 (41694217-41694324) | |
| 721-828, gnl|Hg17|chr19 (41060460-41060567) | |
| 721-828, gnl|Mm7|chr7 (27380324-27380217) | |
| 1126-1515, gnl|bosTau2|chr18 (41695534-41695935) | |
| 1126-1515, gnl|Hg17|chr19 (41062080-41062479) | |
| 1126-1515, gnl|Mm7|chr7 (27378826-27378470) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cbr (2.43153) | |
| hyp (1.5712) | |
| fce (1.08637) | |
| fhi (1.01747) | |
| fbs (0.876732) | |
| ebs (0.591506) | |
| pgl (0.473934) | |
| ecc (0.46014) | |
| ece (0.45861) | |
| fcc (0.39557) | |
| eye (0.170503) | |
| cag (0.151194) | |
| eep (0.122564) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (2.43153) | |
| hyp (1.5712) | |
| fce (1.08637) | |
| fhi (1.01747) | |
| fbs (0.876732) | |
| ebs (0.591506) | |
| pgl (0.473934) | |
| ecc (0.46014) | |
| ece (0.45861) | |
| fcc (0.39557) | |
| eye (0.170503) | |
| cag (0.151194) | |
| eep (0.122564) |