Non-Coding RNA Search

Ss1.1-Mixn-0028b21.5

Sequence:


               
               GAAGACAAAAGTAAGAAAAAGGGGCAAGAGGAAAAACAACCTAAAAAGCAGCTTAAAAAG
GATGAAGAGGGCCAGAAGGAAGAAGATAAGCCAAGAAAAGAGCCAGATAAAAAAGAGGGG
AAAAAAGAAGTTGAATCAAAAAGGAAAAATTTAACTAAAACGGGGGTTACATCAACCTCT
GATTCCGAAGAGGAAGGAGATGATCAAGAAGGTGAAAAGAAGAGAAAAGGTGGAAGAAAC
TTTCAGACTGCTCATAGAAGGAATATGCTGAAAGGCCAACATGAGAAAGAAGCAGCAGAT
AGAAAACGCAAGCAAGAAGAACAAATGGAAACTGAGCACCAAACAACATGTAATCTACAG
TAATAAAAAATATATCTCATTTTGGGCTCAAAGCATTAATCCAGTTACTGAAAAGAGAAT
ACAAGTGGAGCAAACAAGAGATGAAGATCTTGAGACAGACTCATTGGACTGAATTTCCCC
CTCCCCCCCTTGATGGAAGAATGTTCCAGATTCTAAATTGAGGACTTCATTAATGGCATT
ATTACTGTGTTATGATTGTTAAAAAACATTTCCTGTAAGGTACACACTACATACTAAGGT
CGGCCATCATTCCTGTTAAAAGTTTTTTTACCAAGCTTAAAATGAAGCTTTGTGTTTGAA
AGTTATAAGCTCAGATGAAGATGGTGGTTGTACATTATTTCATTTAGAAAATATAAAATT
CATTTTGTTTTGAAGCTAGGTGTTAAACTGGAATAGCTATTATACCCCCACAGAATGGGG
CAGTTGTGCCCTTCCCTTGACATTCTTTTGTTGTTTAAATCTTTAGAATATTAATAATTG
TTTTTTTAATCCTGAGAGATTAAACAGTAGACTTGTTAAGAAAACAAAAATGAAACTGTA
ACCAAAATTTTAAAATAAAGTTTTTTTAAAAAAACCTGATTTTTAGATATTTTTTTGTTC
TTGTCTATTTCAATTGGTTTATTATAATAGGGCCTGAACTCCAAGTCAAGGTACTAGAAA
TTATTAAGAATTCATTTTTAAATGGTTATTTTTGTGATTTACAGTAAAGTGGTACCTTTT
CATTTGTGAAATGATATGTAAATGTTAGTGAATGTCACTGAAGTTTGATATACTGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGACAAAAGTAAGAAAAAGGGGCAAGAGGAAAAACAACCTAAAAAGCAGCTTAAAAAG
GATGAAGAGGGCCAGAAGGAAGAAGATAAGCCAAGAAAAGAGCCAGATAAAAAAGAGGGG
AAAAAAGAAGTTGAATCAAAAAGGAAAAATTTAACTAAAACGGGGGTTACATCAACCTCT
GATTCCGAAGAGGAAGGAGATGATCAAGAAGGTGAAAAGAAGAGAAAAGGTGGAAGAAAC
TTTCAGACTGCTCATAGAAGGAATATGCTGAAAGGCCAACATGAGAAAGAAGCAGCAGAT
AGAAAACGCAAGCAAGAAGAACAAATGGAAACTGAGCACCAAACAACATGTAATCTACAG
TAATAAAAAATATATCTCATTTTGGGCTCAAAGCATTAATCCAGTTACTGAAAAGAGAAT
ACAAGTGGAGCAAACAAGAGATGAAGATCTTGAGACAGACTCATTGGACTGAATTTCCCC
CTCCCCCCCTTGATGGAAGAATGTTCCAGATTCTAAATTGAGGACTTCATTAATGGCATT
ATTACTGTGTTATGATTGTTAAAAAACATTTCCTGTAAGGTACACACTACATACTAAGGT
CGGCCATCATTCCTGTTAAAAGTTTTTTTACCAAGCTTAAAATGAAGCTTTGTGTTTGAA
AGTTATAAGCTCAGATGAAGATGGTGGTTGTACATTATTTCATTTAGAAAATATAAAATT
CATTTTGTTTTGAAGCTAGGTGTTAAACTGGAATAGCTATTATACCCCCACAGAATGGGG
CAGTTGTGCCCTTCCCTTGACATTCTTTTGTTGTTTAAATCTTTAGAATATTAATAATTG
TTTTTTTAATCCTGAGAGATTAAACAGTAGACTTGTTAAGAAAACAAAAATGAAACTGTA
ACCAAAATTTTAAAATAAAGTTTTTTTAAAAAAACCTGATTTTTAGATATTTTTTTGTTC
TTGTCTATTTCAATTGGTTTATTATAATAGGGCCTGAACTCCAAGTCAAGGTACTAGAAA
TTATTAAGAATTCATTTTTAAATGGTTATTTTTGTGATTTACAGTAAAGTGGTACCTTTT
CATTTGTGAAATGATATGTAAATGTTAGTGAATGTCACTGAAGTTTGATATACTGGCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               726-880, + strand, RNAz p=0.809121

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               726-880, + strand, RNAz p=0.809121

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               810-897, + strand, RNAmicro p=0.999576

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               810-897, + strand, RNAmicro p=0.999576

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               215-338, gnl|bosTau2|chr8 (14280407-14280284)
               

               
               215-338, gnl|Hg17|chr9 (15045902-15046025)
               

               
               215-338, gnl|Mm7|chr4 (82867442-82867321)
               


               
               339-1140, gnl|bosTau2|chr8 (14278915-14278111)
               

               
               339-1140, gnl|Mm7|chr4 (82866199-82865377)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-338, gnl|bosTau2|chr8 (14280407-14280284)
               

               
               215-338, gnl|Hg17|chr9 (15045902-15046025)
               

               
               215-338, gnl|Mm7|chr4 (82867442-82867321)
               


               
               339-1140, gnl|bosTau2|chr8 (14278915-14278111)
               

               
               339-1140, gnl|Mm7|chr4 (82866199-82865377)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	215-338, gnl\|bosTau2\|chr8 (14280407-14280284)
	215-338, gnl\|Hg17\|chr9 (15045902-15046025)
	215-338, gnl\|Mm7\|chr4 (82867442-82867321)

	339-1140, gnl\|bosTau2\|chr8 (14278915-14278111)
	339-1140, gnl\|Mm7\|chr4 (82866199-82865377)

	ece (0.229305)
	tes (0.207814)
	fcc (0.197785)
	fbs (0.175346)
	eye (0.170503)
	bfe (0.149858)
	nmm (0.132802)
	ova (0.129132)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)