Non-Coding RNA Search

Ss1.1-Mixn-0028c03.5

Sequence:


               
               CAGCCTTCAATCACAATGGAAACCTGCTGGTCACGGGGGCGGCCGACGGCGTCATCCGGC
TGTTCGATATGCAGCAGCACGAGTGCGCTATGAGCTGGAAGGCCCACTGCGGGGAGGTGT
ACTCCGTGGAGTTCAGTTACGACGAGAACACCGTCTACAGCATCGGCGAGGACGGGAAGT
TCATCCAGTGGAACATCCACAAGAGCGGCCTGAAGGTGTCCGAGTACAGCCTCCCCGCCG
ACGCCACGGGCCCCTTTGTGCTGTCCGGGTACAGCGGCTACAAGCAGGTTCAGGTCCCCC
GGGGGCGACTCTTCGCTTTTGACTCGGAGGGAAATTACATGCTGACGTGTTCTGCCACGG
GAGGCGTCATCTACAAGCTGAGCGGGGATGAGAAGGTTCTGGAGAGCTGTTTGAGCCTGG
GTGGCCACCGAGCCCCTGTGGTCACCGTGGACTGGAGCACGGCCATGGACTGCGGGACCT
GCCTCACAGCCTCCATGGACGGCAAGATCAAGCTGACCACCCTCCTGGCCCATAAAGTCT
GAGGGGACCGGTCCTGAGGGACACCCACAGAAGCAATATTACCCTGGGCAGGGGGCCGGC
AGACAACATGGAAAGACAGGACGCTCCACTCCCAGCCCCCTGCCAGGGCGGGGAGTCTTC
AGGGAGAGACCGTCCAGGGGGCTCGGCCATGTCCAGCTGCCGGGGCCAGAATGTGAGCCA
CATGGAGTGGTTGCCCGTGTTCCCCAGATACCAGGACGCTTGGCTCTGCCAGGAGCAGGC
TCCAGACGCGGGAGGAACACTCAGGAAGCAGGAGAAGCACTGTCACGGCTGCTCTGTTGG
CCCAGAAGAGATTGAAAGTATTTTGTATATATTCGCTCACTTTTCTTTTTTAAAAAAAGG
ATGCTCTTGCGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTTCAATCACAATGGAAACCTGCTGGTCACGGGGGCGGCCGACGGCGTCATCCGGC
TGTTCGATATGCAGCAGCACGAGTGCGCTATGAGCTGGAAGGCCCACTGCGGGGAGGTGT
ACTCCGTGGAGTTCAGTTACGACGAGAACACCGTCTACAGCATCGGCGAGGACGGGAAGT
TCATCCAGTGGAACATCCACAAGAGCGGCCTGAAGGTGTCCGAGTACAGCCTCCCCGCCG
ACGCCACGGGCCCCTTTGTGCTGTCCGGGTACAGCGGCTACAAGCAGGTTCAGGTCCCCC
GGGGGCGACTCTTCGCTTTTGACTCGGAGGGAAATTACATGCTGACGTGTTCTGCCACGG
GAGGCGTCATCTACAAGCTGAGCGGGGATGAGAAGGTTCTGGAGAGCTGTTTGAGCCTGG
GTGGCCACCGAGCCCCTGTGGTCACCGTGGACTGGAGCACGGCCATGGACTGCGGGACCT
GCCTCACAGCCTCCATGGACGGCAAGATCAAGCTGACCACCCTCCTGGCCCATAAAGTCT
GAGGGGACCGGTCCTGAGGGACACCCACAGAAGCAATATTACCCTGGGCAGGGGGCCGGC
AGACAACATGGAAAGACAGGACGCTCCACTCCCAGCCCCCTGCCAGGGCGGGGAGTCTTC
AGGGAGAGACCGTCCAGGGGGCTCGGCCATGTCCAGCTGCCGGGGCCAGAATGTGAGCCA
CATGGAGTGGTTGCCCGTGTTCCCCAGATACCAGGACGCTTGGCTCTGCCAGGAGCAGGC
TCCAGACGCGGGAGGAACACTCAGGAAGCAGGAGAAGCACTGTCACGGCTGCTCTGTTGG
CCCAGAAGAGATTGAAAGTATTTTGTATATATTCGCTCACTTTTCTTTTTTAAAAAAAGG
ATGCTCTTGCGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               178-377, gnl|bosTau2|chr4 (54228987-54228788)
               

               
               178-377, gnl|Hg17|chr7 (134329178-134328979)
               

               
               178-377, gnl|Mm7|chr6 (34815585-34815386)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-377, gnl|bosTau2|chr4 (54228987-54228788)
               

               
               178-377, gnl|Hg17|chr7 (134329178-134328979)
               

               
               178-377, gnl|Mm7|chr6 (34815585-34815386)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               nbm (0.297974)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.297974)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

	178-377, gnl\|bosTau2\|chr4 (54228987-54228788)
	178-377, gnl\|Hg17\|chr7 (134329178-134328979)
	178-377, gnl\|Mm7\|chr6 (34815585-34815386)

	nbm (0.297974)
	mas (0.210305)
	fbs (0.175346)
	csp (0.161186)
	pty (0.142714)
	ute (0.132784)
	cly (0.120642)