Ss1.1-Mixn-0028d07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAACTGGCCATAAGCTCCATCCTCCGAAAGGGTATAAAGAAGAAGAATTTAATTGGG CAGACCTATCTCAAGACTTGCAAAGCTCAGGCTGCTCCCAAGTCATTATTTGAAAATCAG AATATAACAGTGATCCCATCAGGCTTTCGCGTGGGAATGAAGCTTGAAGCTGTAGACAAA AAGAACCCTGCATTCATCTGTGTTGCTACGGTAACAGATATGGTGGACAATCGTTTCCTG GTACATTTTGACAACTGGGATGAGAGCTATGACTATTGGTGTGAAGCATCTAGTCCACAC ATTCATCCAGTTGGCTGGTGTAAAGAACATAGAAGAACTCTTATTACTCCTCCAGGTTAT CCAAATGTGAAGCATTTTTCTTGGGATAAATACTTAGAAGAAACCAATTCTTTGCCTGCT CCTGCAAGAGCTTTCAAAGTGAAACCTCCACATGGATTCCAGAAAAAAATGAAGCTTGAA GTCATAGATAAAAGAAATCCCGTGTTTATTAGAGTAGCAACAGTTGCAGACACGGATGAT CACCGAATAAAAGTTCACTTTGACGGCTGGAATAGCTGCTATGATTACTGGATAGATGCA GATTCTCCTGATNATCACCCCGTTGGTTGGGTGTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAACTGGCCATAAGCTCCATCCTCCGAAAGGGTATAAAGAAGAAGAATTTAATTGGG CAGACCTATCTCAAGACTTGCAAAGCTCAGGCTGCTCCCAAGTCATTATTTGAAAATCAG AATATAACAGTGATCCCATCAGGCTTTCGCGTGGGAATGAAGCTTGAAGCTGTAGACAAA AAGAACCCTGCATTCATCTGTGTTGCTACGGTAACAGATATGGTGGACAATCGTTTCCTG GTACATTTTGACAACTGGGATGAGAGCTATGACTATTGGTGTGAAGCATCTAGTCCACAC ATTCATCCAGTTGGCTGGTGTAAAGAACATAGAAGAACTCTTATTACTCCTCCAGGTTAT CCAAATGTGAAGCATTTTTCTTGGGATAAATACTTAGAAGAAACCAATTCTTTGCCTGCT CCTGCAAGAGCTTTCAAAGTGAAACCTCCACATGGATTCCAGAAAAAAATGAAGCTTGAA GTCATAGATAAAAGAAATCCCGTGTTTATTAGAGTAGCAACAGTTGCAGACACGGATGAT CACCGAATAAAAGTTCACTTTGACGGCTGGAATAGCTGCTATGATTACTGGATAGATGCA GATTCTCCTGATNATCACCCCGTTGGTTGGGTGTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 127-284, gnl|bosTau2|chr9 (38564976-38565133) | |
| 127-284, gnl|canFam2|chr1 (71643050-71643278) | |
| 127-284, gnl|danRer3|chr20 (2563005-2563227) | |
| 127-284, gnl|dasNov1|scaffold_10094 (37491-37265) | |
| 127-284, gnl|echTel1|scaffold_283832 (35986-36214) | |
| 127-284, gnl|fr1|chrUn (62300249-62300416) | |
| 127-284, gnl|galGal2|chr23 (2311785-2311563) | |
| 127-284, gnl|hg17|chr6 (130433774-130433999) | |
| 127-284, gnl|Hg17|chr6 (130433814-130433971) | |
| 127-284, gnl|loxAfr1|scaffold_16081 (21466-21694) | |
| 127-284, gnl|mm7|chr10 (26080066-26079840) | |
| 127-284, gnl|Mm7|chr10 (26080024-26079867) | |
| 127-284, gnl|monDom2|scaffold_0 (82335815-82335593) | |
| 127-284, gnl|oryCun1|scaffold_146636 (1685-1913) | |
| 127-284, gnl|panTro1|chr5 (132991496-132991724) | |
| 127-284, gnl|rheMac2|chr4 (133820724-133820496) | |
| 127-284, gnl|rn3|chr1 (19494975-19495206) | |
| 127-284, gnl|tetNig1|chr8 (7479119-7479286) | |
| 127-284, gnl|xenTro1|scaffold_864 (110919-111156) | |
| 441-554, gnl|bosTau2|chr9 (38578685-38578798) | |
| 441-554, gnl|canFam2|chr1 (71665159-71665275) | |
| 441-554, gnl|danRer3|chr20 (2569185-2569301) | |
| 441-554, gnl|dasNov1|scaffold_12874 (49761-49877) | |
| 441-554, gnl|echTel1|scaffold_182037 (1988-1888) | |
| 441-554, gnl|fr1|chrUn (62300858-62300974) | |
| 441-554, gnl|hg17|chr6 (130448976-130449092) | |
| 441-554, gnl|Hg17|chr6 (130448977-130449090) | |
| 441-554, gnl|loxAfr1|scaffold_4179 (6942-7058) | |
| 441-554, gnl|mm7|chr10 (26066147-26066031) | |
| 441-554, gnl|Mm7|chr10 (26066144-26066031) | |
| 441-554, gnl|monDom2|scaffold_0 (82297406-82297290) | |
| 441-554, gnl|oryCun1|scaffold_175077 (1126-1242) | |
| 441-554, gnl|panTro1|chr5 (133006692-133006808) | |
| 441-554, gnl|rheMac2|chr4 (133806147-133806031) | |
| 441-554, gnl|rn3|chr1 (19511059-19511175) | |
| 441-554, gnl|tetNig1|chr8 (7479728-7479843) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 127-284, gnl|bosTau2|chr9 (38564976-38565133) | |
| 127-284, gnl|canFam2|chr1 (71643050-71643278) | |
| 127-284, gnl|danRer3|chr20 (2563005-2563227) | |
| 127-284, gnl|dasNov1|scaffold_10094 (37491-37265) | |
| 127-284, gnl|echTel1|scaffold_283832 (35986-36214) | |
| 127-284, gnl|fr1|chrUn (62300249-62300416) | |
| 127-284, gnl|galGal2|chr23 (2311785-2311563) | |
| 127-284, gnl|hg17|chr6 (130433774-130433999) | |
| 127-284, gnl|Hg17|chr6 (130433814-130433971) | |
| 127-284, gnl|loxAfr1|scaffold_16081 (21466-21694) | |
| 127-284, gnl|mm7|chr10 (26080066-26079840) | |
| 127-284, gnl|Mm7|chr10 (26080024-26079867) | |
| 127-284, gnl|monDom2|scaffold_0 (82335815-82335593) | |
| 127-284, gnl|oryCun1|scaffold_146636 (1685-1913) | |
| 127-284, gnl|panTro1|chr5 (132991496-132991724) | |
| 127-284, gnl|rheMac2|chr4 (133820724-133820496) | |
| 127-284, gnl|rn3|chr1 (19494975-19495206) | |
| 127-284, gnl|tetNig1|chr8 (7479119-7479286) | |
| 127-284, gnl|xenTro1|scaffold_864 (110919-111156) | |
| 441-554, gnl|bosTau2|chr9 (38578685-38578798) | |
| 441-554, gnl|canFam2|chr1 (71665159-71665275) | |
| 441-554, gnl|danRer3|chr20 (2569185-2569301) | |
| 441-554, gnl|dasNov1|scaffold_12874 (49761-49877) | |
| 441-554, gnl|echTel1|scaffold_182037 (1988-1888) | |
| 441-554, gnl|fr1|chrUn (62300858-62300974) | |
| 441-554, gnl|hg17|chr6 (130448976-130449092) | |
| 441-554, gnl|Hg17|chr6 (130448977-130449090) | |
| 441-554, gnl|loxAfr1|scaffold_4179 (6942-7058) | |
| 441-554, gnl|mm7|chr10 (26066147-26066031) | |
| 441-554, gnl|Mm7|chr10 (26066144-26066031) | |
| 441-554, gnl|monDom2|scaffold_0 (82297406-82297290) | |
| 441-554, gnl|oryCun1|scaffold_175077 (1126-1242) | |
| 441-554, gnl|panTro1|chr5 (133006692-133006808) | |
| 441-554, gnl|rheMac2|chr4 (133806147-133806031) | |
| 441-554, gnl|rn3|chr1 (19511059-19511175) | |
| 441-554, gnl|tetNig1|chr8 (7479728-7479843) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |