Ss1.1-Mixn-0028d17.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGGGAAGAAGCTTGGGGGGCTTTTTCCTCCAGGAGGGGAAGGCAGCCCAGAGGCCAC TGTGGTGTCAGACGAGGATGAGGCCGCAGAGATGGAGGATGAGGCAGTGAGAAGCCGAGT GCAGCACAAGCCCACGGAGGACAAGCTCAGGCTAGTGAAGGAGCTCTCCGATATGGTCAT TTACTGCAAGAGTGTCCACTTTCGGGGCTTCCCCAGCCCTGGCACCCCCGGGCAGGCTTT CTATGAGATGGCATCCTTCTCTGAGAACCGCGCCCTCCGACTGCTCCAAGAGTCAGGAAA CAGCTTTGTCCGCCACAACGTGAATCACCTGAGCAGGATCTACCCTGCTGGCTGGAGAAC GGACTCCTCCAACTATAACCCCGTGGAGATGTGGAACTCTGGCTGCCAGATTGTGGCCCT GAACTTCCAGACACCTGGGCCAGAGATGGACGTGTACCAGGGCCGCTTCCAGGACAACGG GGCCTGTGGGTATGTGCTGAAGCCTGCCTTCCTGCGAGACCCCAACTCTGCCTTCAACTC CCGTGCCCTGGCTCAGGGGCCCTGGTGGGCTCGGAAGCGGCTCAGTGTCAGGGTCATCTC AGGGCAGCAGCTGCCAAAAGTCAACAAGAATAAGAATTCAATTGTGGACCCCAAGGTGAC AGTAGAGATCCACGGTGTGGGCCGTGATGTGGCCAGTCGCCAGACCGCTGTGGTCACCAA TAACGGTTTCAACCCTTGGTGGGACACGGAGTTTGAGTTTGAGGTGGTTGTGCCTGAGCT GGCCCTCGTGCGCTTCGTGGTGGAGGATTATGACGCCTCTTCCAAGAACGACTTCATTGG CCAGAGCACCATCCCCTTGAGCAGCCTCAAGCAGGGATACCGCCACGTCCACCTCCTGTC CAAGAATGGAGACCAGTACCCGTCTGCCACCCTCTTTGTGAAGGTGGCCCTCTGGGACTA GGCCTGGAGAGTCTCCGGGGGGCTGCCCCGCGCGGAATGGGCCCACTGTCCACATCTAGG GGGCAGGACAGGGGCTGCTCTCAACCTCTCGCTCAGAGCTGGCGACCCCGCACTGCCTTC AGCTCCAACCTGTTTTCTGTGCTGCTGCCTCTCGGAACCCAGGAGCTGGCCCCATGCCTG GAGCTGTCCCCAGTTCCATCAGGAATGACACTGCAGCCCTCTCCACCCTCACTGGCCCTA GGTTGAGGGATTTTATAAAAATCCTAAGAATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGGGAAGAAGCTTGGGGGGCTTTTTCCTCCAGGAGGGGAAGGCAGCCCAGAGGCCAC TGTGGTGTCAGACGAGGATGAGGCCGCAGAGATGGAGGATGAGGCAGTGAGAAGCCGAGT GCAGCACAAGCCCACGGAGGACAAGCTCAGGCTAGTGAAGGAGCTCTCCGATATGGTCAT TTACTGCAAGAGTGTCCACTTTCGGGGCTTCCCCAGCCCTGGCACCCCCGGGCAGGCTTT CTATGAGATGGCATCCTTCTCTGAGAACCGCGCCCTCCGACTGCTCCAAGAGTCAGGAAA CAGCTTTGTCCGCCACAACGTGAATCACCTGAGCAGGATCTACCCTGCTGGCTGGAGAAC GGACTCCTCCAACTATAACCCCGTGGAGATGTGGAACTCTGGCTGCCAGATTGTGGCCCT GAACTTCCAGACACCTGGGCCAGAGATGGACGTGTACCAGGGCCGCTTCCAGGACAACGG GGCCTGTGGGTATGTGCTGAAGCCTGCCTTCCTGCGAGACCCCAACTCTGCCTTCAACTC CCGTGCCCTGGCTCAGGGGCCCTGGTGGGCTCGGAAGCGGCTCAGTGTCAGGGTCATCTC AGGGCAGCAGCTGCCAAAAGTCAACAAGAATAAGAATTCAATTGTGGACCCCAAGGTGAC AGTAGAGATCCACGGTGTGGGCCGTGATGTGGCCAGTCGCCAGACCGCTGTGGTCACCAA TAACGGTTTCAACCCTTGGTGGGACACGGAGTTTGAGTTTGAGGTGGTTGTGCCTGAGCT GGCCCTCGTGCGCTTCGTGGTGGAGGATTATGACGCCTCTTCCAAGAACGACTTCATTGG CCAGAGCACCATCCCCTTGAGCAGCCTCAAGCAGGGATACCGCCACGTCCACCTCCTGTC CAAGAATGGAGACCAGTACCCGTCTGCCACCCTCTTTGTGAAGGTGGCCCTCTGGGACTA GGCCTGGAGAGTCTCCGGGGGGCTGCCCCGCGCGGAATGGGCCCACTGTCCACATCTAGG GGGCAGGACAGGGGCTGCTCTCAACCTCTCGCTCAGAGCTGGCGACCCCGCACTGCCTTC AGCTCCAACCTGTTTTCTGTGCTGCTGCCTCTCGGAACCCAGGAGCTGGCCCCATGCCTG GAGCTGTCCCCAGTTCCATCAGGAATGACACTGCAGCCCTCTCCACCCTCACTGGCCCTA GGTTGAGGGATTTTATAAAAATCCTAAGAATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1031-1174, - strand, RNAz p=0.926582 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1031-1174, - strand, RNAz p=0.926582 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 131-297, gnl|bosTau2|chr22 (8973003-8973168) | |
| 131-297, gnl|Hg17|chr3 (38025931-38025766) | |
| 131-297, gnl|Mm7|chr9 (118754131-118753966) | |
| 396-594, gnl|bosTau2|chr22 (8973881-8974079) | |
| 396-594, gnl|Hg17|chr3 (38025149-38024951) | |
| 396-594, gnl|Mm7|chr9 (118752875-118752677) | |
| 725-876, gnl|bosTau2|chr22 (8974379-8974530) | |
| 725-876, gnl|canFam2|chr23 (10793572-10793736) | |
| 725-876, gnl|danRer3|chrNA (169245461-169245630) | |
| 725-876, gnl|dasNov1|scaffold_251967 (3834-3670) | |
| 725-876, gnl|echTel1|scaffold_219506 (3745-3907) | |
| 725-876, gnl|fr1|chrUn (122603320-122603163) | |
| 725-876, gnl|galGal2|chr2 (4091482-4091641) | |
| 725-876, gnl|hg17|chr3 (38024500-38024664) | |
| 725-876, gnl|Hg17|chr3 (38024659-38024508) | |
| 725-876, gnl|loxAfr1|scaffold_53896 (4851-4693) | |
| 725-876, gnl|mm7|chr9 (118752218-118752382) | |
| 725-876, gnl|Mm7|chr9 (118752377-118752226) | |
| 725-876, gnl|monDom2|scaffold_18 (41347261-41347098) | |
| 725-876, gnl|oryCun1|scaffold_187557 (858-1026) | |
| 725-876, gnl|panTro1|chr2 (39130254-39130417) | |
| 725-876, gnl|rheMac2|chr2 (98535258-98535094) | |
| 725-876, gnl|rn3|chr8 (124043300-124043464) | |
| 725-876, gnl|tetNig1|chr6 (3142759-3142915) | |
| 725-876, gnl|xenTro1|scaffold_318 (269100-268936) | |
| 1031-1233, gnl|bosTau2|chr22 (8974806-8975011) | |
| 1031-1233, gnl|Hg17|chr3 (38024210-38023991) | |
| 1031-1233, gnl|Mm7|chr9 (118751948-118751732) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-297, gnl|bosTau2|chr22 (8973003-8973168) | |
| 131-297, gnl|Hg17|chr3 (38025931-38025766) | |
| 131-297, gnl|Mm7|chr9 (118754131-118753966) | |
| 396-594, gnl|bosTau2|chr22 (8973881-8974079) | |
| 396-594, gnl|Hg17|chr3 (38025149-38024951) | |
| 396-594, gnl|Mm7|chr9 (118752875-118752677) | |
| 725-876, gnl|bosTau2|chr22 (8974379-8974530) | |
| 725-876, gnl|canFam2|chr23 (10793572-10793736) | |
| 725-876, gnl|danRer3|chrNA (169245461-169245630) | |
| 725-876, gnl|dasNov1|scaffold_251967 (3834-3670) | |
| 725-876, gnl|echTel1|scaffold_219506 (3745-3907) | |
| 725-876, gnl|fr1|chrUn (122603320-122603163) | |
| 725-876, gnl|galGal2|chr2 (4091482-4091641) | |
| 725-876, gnl|hg17|chr3 (38024500-38024664) | |
| 725-876, gnl|Hg17|chr3 (38024659-38024508) | |
| 725-876, gnl|loxAfr1|scaffold_53896 (4851-4693) | |
| 725-876, gnl|mm7|chr9 (118752218-118752382) | |
| 725-876, gnl|Mm7|chr9 (118752377-118752226) | |
| 725-876, gnl|monDom2|scaffold_18 (41347261-41347098) | |
| 725-876, gnl|oryCun1|scaffold_187557 (858-1026) | |
| 725-876, gnl|panTro1|chr2 (39130254-39130417) | |
| 725-876, gnl|rheMac2|chr2 (98535258-98535094) | |
| 725-876, gnl|rn3|chr8 (124043300-124043464) | |
| 725-876, gnl|tetNig1|chr6 (3142759-3142915) | |
| 725-876, gnl|xenTro1|scaffold_318 (269100-268936) | |
| 1031-1233, gnl|bosTau2|chr22 (8974806-8975011) | |
| 1031-1233, gnl|Hg17|chr3 (38024210-38023991) | |
| 1031-1233, gnl|Mm7|chr9 (118751948-118751732) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nbm (0.297974) | |
| fli (0.202881) | |
| nep (0.183925) | |
| ton (0.1755) | |
| lnt (0.142308) | |
| cov (0.132153) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) | |
| fli (0.202881) | |
| nep (0.183925) | |
| ton (0.1755) | |
| lnt (0.142308) | |
| cov (0.132153) |