Non-Coding RNA Search

Ss1.1-Mixn-0028f07.5

Sequence:


               
               AGGAACAAGACGCGCAGCGGTAAACACTTCATAAATCCAAGCCTAGGCTGACCCGAGCAT
CCTGGCTGCAAAGGACGTTTTGTTGGACGCCCCGCCCACCTACGTCCTGTTTCCTCTCCA
ACTCAAGCAAAAACAGGCCTGTTTCTGGAAACCAACCCCTTTGCGATTTGGGGAGGGGGG
AGCAGCCAAGCGTGGGTCGTTCTTTTAACACGGCCAGACAGGAGGCCAGGAAGGGGGGGC
AGTGTGTGGGGAGGCTCTGAAGCGTTTGGAAAAGCAAATCTGGGTAATTAACGAGAAGAA
GTCGATTTTTAAAGTTTGTGCATTTGTACGCTTTTTATTGCTGAAGCCTACAGGCCTGTT
TTCCTGGCATTTTTTTTAATAGGCAACAAAAGCAGGCGACAGAGTCTCTCGGTTTTTCGA
AGAAACTCTTGGCAAACATTGGGTATCATGGTGGGTTGAAGGCTTTGGCTTTGCTGCCTG
TCTGCCTCCTCCTCTGCCCCTACTTCCCGCCTCACAGACGTGAACGCGTGGTTATTTTGT
TCATGGGGAAGGTCATTTAGACGTGCAGTCGCTTCCTCTGAAATGGAGGGAACGATTGAA
AAGAGCTGTGCCCGGCTGTGACAAAGCGTCATTGCCATGCAGTGGGGGGGCAGGGCTGCG
GGGGTGGGGGGATTTGGGTTACATTAGATGTAAGGGATTCCTTGTGGTTGCCATAGACTC
TAGCGCAGTTGTAATTTCAGTTGATCCCATCTGGTTCCCAGGAAATCACGTGTGATTGAG
TTAAATCCAGCCTCCAATCTTTGATAACCGGAGTTGAATCTGAACTTGACCGCCAAACGT
TTCCCACCTGGTGACCTTCCAGAATCTTCAGATAGAAGCCTTTGCTCTTGTAGGGGGTGG
GGAGTCACGTGGGGAGTGGTGGCCCAGAAGATGTAAGGATTCTGGGATGTGTATTCCCTG
GCGGTTCCTTCTCTCCTGCCTTCCCCTCTCCCTGCCCCTCTAACCTTTTGCTGAAGGGGG
TGGCACCACTGACATCTCTGGGCAATGTCAGCATAGCTGTCAAGTTCCTATACTACTGCC
TTTTGATTTGCATTTTGGCTAACCATGGATCTTCTTATAGGACGTTTGATCAGAGTGAAC
GGAACATTGTGAATCAGCCGCCAGGGCCTGGTGGGGAGTGGAGGGAAGTCATCAAGCCTT
CTAGGTAGCTTGAGGGGCCATGACTCAGTTTACCTGCCACCTACCACCTGGGAGGCAGGG
GTGGCTGATTCAGAACAAGAAACTGTTGTGTATAAGTCTTTCCAGAGGAGTTTCTTAATG
AGATATTTGTATTTATTTCCAGACCAATAAATTTGTAACTTTGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACAAGACGCGCAGCGGTAAACACTTCATAAATCCAAGCCTAGGCTGACCCGAGCAT
CCTGGCTGCAAAGGACGTTTTGTTGGACGCCCCGCCCACCTACGTCCTGTTTCCTCTCCA
ACTCAAGCAAAAACAGGCCTGTTTCTGGAAACCAACCCCTTTGCGATTTGGGGAGGGGGG
AGCAGCCAAGCGTGGGTCGTTCTTTTAACACGGCCAGACAGGAGGCCAGGAAGGGGGGGC
AGTGTGTGGGGAGGCTCTGAAGCGTTTGGAAAAGCAAATCTGGGTAATTAACGAGAAGAA
GTCGATTTTTAAAGTTTGTGCATTTGTACGCTTTTTATTGCTGAAGCCTACAGGCCTGTT
TTCCTGGCATTTTTTTTAATAGGCAACAAAAGCAGGCGACAGAGTCTCTCGGTTTTTCGA
AGAAACTCTTGGCAAACATTGGGTATCATGGTGGGTTGAAGGCTTTGGCTTTGCTGCCTG
TCTGCCTCCTCCTCTGCCCCTACTTCCCGCCTCACAGACGTGAACGCGTGGTTATTTTGT
TCATGGGGAAGGTCATTTAGACGTGCAGTCGCTTCCTCTGAAATGGAGGGAACGATTGAA
AAGAGCTGTGCCCGGCTGTGACAAAGCGTCATTGCCATGCAGTGGGGGGGCAGGGCTGCG
GGGGTGGGGGGATTTGGGTTACATTAGATGTAAGGGATTCCTTGTGGTTGCCATAGACTC
TAGCGCAGTTGTAATTTCAGTTGATCCCATCTGGTTCCCAGGAAATCACGTGTGATTGAG
TTAAATCCAGCCTCCAATCTTTGATAACCGGAGTTGAATCTGAACTTGACCGCCAAACGT
TTCCCACCTGGTGACCTTCCAGAATCTTCAGATAGAAGCCTTTGCTCTTGTAGGGGGTGG
GGAGTCACGTGGGGAGTGGTGGCCCAGAAGATGTAAGGATTCTGGGATGTGTATTCCCTG
GCGGTTCCTTCTCTCCTGCCTTCCCCTCTCCCTGCCCCTCTAACCTTTTGCTGAAGGGGG
TGGCACCACTGACATCTCTGGGCAATGTCAGCATAGCTGTCAAGTTCCTATACTACTGCC
TTTTGATTTGCATTTTGGCTAACCATGGATCTTCTTATAGGACGTTTGATCAGAGTGAAC
GGAACATTGTGAATCAGCCGCCAGGGCCTGGTGGGGAGTGGAGGGAAGTCATCAAGCCTT
CTAGGTAGCTTGAGGGGCCATGACTCAGTTTACCTGCCACCTACCACCTGGGAGGCAGGG
GTGGCTGATTCAGAACAAGAAACTGTTGTGTATAAGTCTTTCCAGAGGAGTTTCTTAATG
AGATATTTGTATTTATTTCCAGACCAATAAATTTGTAACTTTGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-212, + strand, RNAz p=0.924117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-212, + strand, RNAz p=0.924117

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK096562, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK096562, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-1365, gnl|bosTau2|chr14 (3813518-3814850)
               

               
               20-1365, gnl|Hg17|chr8 (134319988-134318600)
               

               
               20-1365, gnl|Mm7|chr15 (67014268-67013000)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-1365, gnl|bosTau2|chr14 (3813518-3814850)
               

               
               20-1365, gnl|Hg17|chr8 (134319988-134318600)
               

               
               20-1365, gnl|Mm7|chr15 (67014268-67013000)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               cki (2.97422)
               

               
               amn (1.25313)
               

               
               cst (0.840218)
               

               
               hyp (0.714184)
               

               
               cga (0.558191)
               

               
               fhi (0.508733)
               

               
               jca (0.45584)
               

               
               che (0.408942)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               eli (0.303628)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (2.97422)
               

               
               amn (1.25313)
               

               
               cst (0.840218)
               

               
               hyp (0.714184)
               

               
               cga (0.558191)
               

               
               fhi (0.508733)
               

               
               jca (0.45584)
               

               
               che (0.408942)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               eli (0.303628)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	20-1365, gnl\|bosTau2\|chr14 (3813518-3814850)
	20-1365, gnl\|Hg17\|chr8 (134319988-134318600)
	20-1365, gnl\|Mm7\|chr15 (67014268-67013000)

	cki (2.97422)
	amn (1.25313)
	cst (0.840218)
	hyp (0.714184)
	cga (0.558191)
	fhi (0.508733)
	jca (0.45584)
	che (0.408942)
	eep (0.367692)
	ill (0.351185)
	ecc (0.345105)
	cut (0.339847)
	eli (0.303628)
	kid (0.259471)
	cbe (0.239234)
	cmu (0.186393)
	ton (0.1755)
	duo (0.172801)
	eye (0.170503)
	lin (0.145603)
	ssp (0.13552)
	ute (0.132784)
	med (0.116252)
	jej (0.0989218)