Non-Coding RNA Search

Ss1.1-Mixn-0028f10.5

Sequence:


               
               ACGTTCTTTTGCCTTCATAATGGGGCGTGAGTAAAACTTGGGTAGTACACACAGGTGGCT
GTTTGATACATGGGGCATTAAGACTTGGGGTGGGCTCTCTTGCTTCTTGTGGGTCAGGTG
GGGAGCCCACGCCTTTCACGTCACCATTTACGTGACCAAGGCCGACACAAGGAGGGCACA
GGGCCAGTGCTTGGCCCATTTTTAAGCCAGTGTAACAAGCCTCACCGTGCCGTTCCGTCT
GTTTGCTTTTTAAAATAAGTCACCACAGTTAGATTCCAGCCCTTGCACTTCGAGAGATCT
AGTCTCCACTTTCAGTTGTCTGTTAGGTCAATTCTGTTTACTACGATGGACGTTGAAAAC
CATTTGAGCCTGAAGAATTCTCGGCCAAAATCAGTCTTGCCTCTCATCTTGATTAGATTA
GTTCCCAGATGATTCCGCCCACAGTAGCTTGAGGGGATGAAGCATTTGCCTTAATGATGA
CTTTGTGGTTCACTCAGCTCTGAGACTGTGAGTCGTCAGCCCCCTTCCCCCCAGACTGTA
AGCTCCTCAAGGGCAAGAAGCACATTTTCTCCGTGTGTCGAGGGGCCTGCCAGCACTCTG
TACCCTGTGCAGTACTCGCTACCTTTGGTCTGATGTTGCTGACGAGACCTAAAAAATAAT
CCCTTAAAAATCCTACCATTAAAATGTAGCAAAACTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTTCTTTTGCCTTCATAATGGGGCGTGAGTAAAACTTGGGTAGTACACACAGGTGGCT
GTTTGATACATGGGGCATTAAGACTTGGGGTGGGCTCTCTTGCTTCTTGTGGGTCAGGTG
GGGAGCCCACGCCTTTCACGTCACCATTTACGTGACCAAGGCCGACACAAGGAGGGCACA
GGGCCAGTGCTTGGCCCATTTTTAAGCCAGTGTAACAAGCCTCACCGTGCCGTTCCGTCT
GTTTGCTTTTTAAAATAAGTCACCACAGTTAGATTCCAGCCCTTGCACTTCGAGAGATCT
AGTCTCCACTTTCAGTTGTCTGTTAGGTCAATTCTGTTTACTACGATGGACGTTGAAAAC
CATTTGAGCCTGAAGAATTCTCGGCCAAAATCAGTCTTGCCTCTCATCTTGATTAGATTA
GTTCCCAGATGATTCCGCCCACAGTAGCTTGAGGGGATGAAGCATTTGCCTTAATGATGA
CTTTGTGGTTCACTCAGCTCTGAGACTGTGAGTCGTCAGCCCCCTTCCCCCCAGACTGTA
AGCTCCTCAAGGGCAAGAAGCACATTTTCTCCGTGTGTCGAGGGGCCTGCCAGCACTCTG
TACCCTGTGCAGTACTCGCTACCTTTGGTCTGATGTTGCTGACGAGACCTAAAAAATAAT
CCCTTAAAAATCCTACCATTAAAATGTAGCAAAACTGAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               490-708, gnl|bosTau2|chr11 (23351366-23351129)
               

               
               490-708, gnl|Hg17|chr13 (98262614-98262394)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               490-708, gnl|bosTau2|chr11 (23351366-23351129)
               

               
               490-708, gnl|Hg17|chr13 (98262614-98262394)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               csp (0.322373)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	490-708, gnl\|bosTau2\|chr11 (23351366-23351129)
	490-708, gnl\|Hg17\|chr13 (98262614-98262394)

	csp (0.322373)
	col (0.195008)
	rec (0.17307)
	fhi (0.169578)
	isp (0.150376)
	hlv (0.139256)
	ste (0.135208)
	ute (0.132784)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	jca (0.11396)
	jej (0.0989218)