Ss1.1-Mixn-0028f13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAATACAGCGACATCCTACTGCCTAATTTTTAATGCTTTCCGTAAAAAAAGATGAAAA CAACAGCAACAAAACTGAGGGCTAAACGGTTTTAGGACAACGGTGTACTGTGCCTTGTAG TTCCTGCCTTTTACAGCGTGGAGTCAAAAAACCAAACCCAAGATACGGTCTTGGAATACT TTGGCAGGACCTTGCTGGAATTGTTTGAGGAGAAGAGATGCTGGTTTGTTGAACCAGTTG CAAGAACTCGACAAGCAGATAAGTGACCTGAGACTGGATGTGGAAAAGACCTCTGAAGAG CACCTGGAGACAGACAGCCGACCTAGCTCAGGGTTTTATGAACTGAGTGATGGGGCTTCA GGGTCCCTTTCCAATTCCTCAAACTCGGTCTTCAGTGAATGTTTATCCAGTTGTCACTCC AGCACCTGCTTTTGCAGCCCCTTGGAGGCAGCCTTGACTATATCAGATTGTTGCCCCAAA TCTGCAGATGTGAATCCCAAGTACCAATGCGATCTGGTGTCTAAAAATGGGAATGACGTG TACCGCTACCCCAGCCCGCTTCACGCCGTGGCGGTGCAGAGTCCGATGTTTCTGCTTTGC TTGACCGGAAACCCCCTGAGGGAAGAGGAGAGGCTTGCTAACCATGCCAGTGACATGTGT GTCGGATCCGAGCTGGACGCCGTCAAGACAGACACTTCCTTGCCATCTCCAAGCAGTTTG TGGTCTGCTCCCTATCCTTCATCCAGTAAGAAAATGGATGGTTACATTCTGAGCCTGGTC CAGAAAAAAACACACCCTGTAAGGACCAACAAACCGAGAACCAGTGTGAACGCTGACCCC ACCAAGGGGCTTCTGAGGAATGGGAGTGTTTGTGTCAGAGTGACTGGGGGCATCTCACAG GGCAACAGTGGGAACCTTAAGAATTCTAAACAGATGCCTTTGCCCTCTGGCGGGATCCCT TCTTTGGACAATGGGACATTCTCCCCACTGAAGCAGTGGGCCAAAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAATACAGCGACATCCTACTGCCTAATTTTTAATGCTTTCCGTAAAAAAAGATGAAAA CAACAGCAACAAAACTGAGGGCTAAACGGTTTTAGGACAACGGTGTACTGTGCCTTGTAG TTCCTGCCTTTTACAGCGTGGAGTCAAAAAACCAAACCCAAGATACGGTCTTGGAATACT TTGGCAGGACCTTGCTGGAATTGTTTGAGGAGAAGAGATGCTGGTTTGTTGAACCAGTTG CAAGAACTCGACAAGCAGATAAGTGACCTGAGACTGGATGTGGAAAAGACCTCTGAAGAG CACCTGGAGACAGACAGCCGACCTAGCTCAGGGTTTTATGAACTGAGTGATGGGGCTTCA GGGTCCCTTTCCAATTCCTCAAACTCGGTCTTCAGTGAATGTTTATCCAGTTGTCACTCC AGCACCTGCTTTTGCAGCCCCTTGGAGGCAGCCTTGACTATATCAGATTGTTGCCCCAAA TCTGCAGATGTGAATCCCAAGTACCAATGCGATCTGGTGTCTAAAAATGGGAATGACGTG TACCGCTACCCCAGCCCGCTTCACGCCGTGGCGGTGCAGAGTCCGATGTTTCTGCTTTGC TTGACCGGAAACCCCCTGAGGGAAGAGGAGAGGCTTGCTAACCATGCCAGTGACATGTGT GTCGGATCCGAGCTGGACGCCGTCAAGACAGACACTTCCTTGCCATCTCCAAGCAGTTTG TGGTCTGCTCCCTATCCTTCATCCAGTAAGAAAATGGATGGTTACATTCTGAGCCTGGTC CAGAAAAAAACACACCCTGTAAGGACCAACAAACCGAGAACCAGTGTGAACGCTGACCCC ACCAAGGGGCTTCTGAGGAATGGGAGTGTTTGTGTCAGAGTGACTGGGGGCATCTCACAG GGCAACAGTGGGAACCTTAAGAATTCTAAACAGATGCCTTTGCCCTCTGGCGGGATCCCT TCTTTGGACAATGGGACATTCTCCCCACTGAAGCAGTGGGCCAAAGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 722-841, - strand, RNAz p=0.859355 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 722-841, - strand, RNAz p=0.859355 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 6-196, gnl|bosTau2|chr10 (47716535-47716347) | |
| 6-196, gnl|canFam2|chr8 (36978979-36979482) | |
| 6-196, gnl|dasNov1|scaffold_12756 (14771-14290) | |
| 6-196, gnl|hg17|chr14 (58173489-58173956) | |
| 6-196, gnl|Hg17|chr14 (58173763-58173946) | |
| 6-196, gnl|loxAfr1|scaffold_1343 (8489-7988) | |
| 6-196, gnl|mm7|chr12 (69252864-69253333) | |
| 6-196, gnl|Mm7|chr12 (69253120-69253321) | |
| 6-196, gnl|oryCun1|scaffold_187990 (3912-3449) | |
| 6-196, gnl|panTro1|chr15 (57735341-57735810) | |
| 6-196, gnl|rheMac2|chr7 (121636339-121636804) | |
| 6-196, gnl|rn3|chr6 (93404786-93405253) | |
| 198-332, gnl|bosTau2|chr10 (47712981-47712847) | |
| 198-332, gnl|canFam2|chr8 (36982637-36982858) | |
| 198-332, gnl|danRer3|chrUn (77531997-77532177) | |
| 198-332, gnl|dasNov1|scaffold_12756 (10787-10576) | |
| 198-332, gnl|echTel1|scaffold_320074 (37626-37846) | |
| 198-332, gnl|fr1|chrUn (200096547-200096356) | |
| 198-332, gnl|galGal2|chr5 (51852747-51852564) | |
| 198-332, gnl|hg17|chr14 (58177160-58177377) | |
| 198-332, gnl|Hg17|chr14 (58177206-58177340) | |
| 198-332, gnl|loxAfr1|scaffold_1343 (4797-4577) | |
| 198-332, gnl|mm7|chr12 (69256443-69256661) | |
| 198-332, gnl|Mm7|chr12 (69256524-69256658) | |
| 198-332, gnl|monDom2|scaffold_8 (70769313-70769525) | |
| 198-332, gnl|panTro1|chr15 (57739014-57739231) | |
| 198-332, gnl|rheMac2|chr7 (121639980-121640197) | |
| 198-332, gnl|rn3|chr6 (93408736-93408961) | |
| 198-332, gnl|tetNig1|chr17 (1062266-1062078) | |
| 198-332, gnl|xenTro1|scaffold_33 (1053962-1053795) | |
| 483-1007, gnl|bosTau2|chr10 (47707901-47707377) | |
| 483-1007, gnl|Hg17|chr14 (58181835-58182359) | |
| 483-1007, gnl|Mm7|chr12 (69261005-69261529) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-196, gnl|bosTau2|chr10 (47716535-47716347) | |
| 6-196, gnl|canFam2|chr8 (36978979-36979482) | |
| 6-196, gnl|dasNov1|scaffold_12756 (14771-14290) | |
| 6-196, gnl|hg17|chr14 (58173489-58173956) | |
| 6-196, gnl|Hg17|chr14 (58173763-58173946) | |
| 6-196, gnl|loxAfr1|scaffold_1343 (8489-7988) | |
| 6-196, gnl|mm7|chr12 (69252864-69253333) | |
| 6-196, gnl|Mm7|chr12 (69253120-69253321) | |
| 6-196, gnl|oryCun1|scaffold_187990 (3912-3449) | |
| 6-196, gnl|panTro1|chr15 (57735341-57735810) | |
| 6-196, gnl|rheMac2|chr7 (121636339-121636804) | |
| 6-196, gnl|rn3|chr6 (93404786-93405253) | |
| 198-332, gnl|bosTau2|chr10 (47712981-47712847) | |
| 198-332, gnl|canFam2|chr8 (36982637-36982858) | |
| 198-332, gnl|danRer3|chrUn (77531997-77532177) | |
| 198-332, gnl|dasNov1|scaffold_12756 (10787-10576) | |
| 198-332, gnl|echTel1|scaffold_320074 (37626-37846) | |
| 198-332, gnl|fr1|chrUn (200096547-200096356) | |
| 198-332, gnl|galGal2|chr5 (51852747-51852564) | |
| 198-332, gnl|hg17|chr14 (58177160-58177377) | |
| 198-332, gnl|Hg17|chr14 (58177206-58177340) | |
| 198-332, gnl|loxAfr1|scaffold_1343 (4797-4577) | |
| 198-332, gnl|mm7|chr12 (69256443-69256661) | |
| 198-332, gnl|Mm7|chr12 (69256524-69256658) | |
| 198-332, gnl|monDom2|scaffold_8 (70769313-70769525) | |
| 198-332, gnl|panTro1|chr15 (57739014-57739231) | |
| 198-332, gnl|rheMac2|chr7 (121639980-121640197) | |
| 198-332, gnl|rn3|chr6 (93408736-93408961) | |
| 198-332, gnl|tetNig1|chr17 (1062266-1062078) | |
| 198-332, gnl|xenTro1|scaffold_33 (1053962-1053795) | |
| 483-1007, gnl|bosTau2|chr10 (47707901-47707377) | |
| 483-1007, gnl|Hg17|chr14 (58181835-58182359) | |
| 483-1007, gnl|Mm7|chr12 (69261005-69261529) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |