Non-Coding RNA Search

Ss1.1-Mixn-0028g03.5.5

Sequence:


               
               CTTCCCCAGGTCGTCCAACAGCTTTGACTACATCCTGGCCGCCGACGTGGTCTATGCACA
CCCCTTCCTGGAAGAGCTCCTGCTCACCTTCGAGCACCTGTGCCGAGAAACCACCGTCAT
CCTCTGGGTCATGAAATTCAGGCTGGAAAAGGAAAACAGATTTGTAGATAGATTTCAGGA
GCTCTTTGACCTGGAGGAGATTTCCAGTTTCCCTAGCCTGAATATTAAGTTGTTTAAAGC
CACGAAGAAAAATCGGAGGAATGCGTGATATCCTCAAAGGAAGACTTGGCAAGTGGAGGC
AGTTTCCGGTAGATTATGGCTTTAACAAAGATCCTGGATAATCTGATGTAGCACTGACTT
TCCCCAGGGGAAACACACATATACACACACACACACACACACACACACACACACGCACGC
ACGCACGCACGCACACACACACACCCCTCACCTCAGACAGGGATTTTTCCCAGGTTCAGC
CCGGGGGTGCTAGGGGATGGCTACGCCGTTCCGTGTGCTAATTGGTTAGGACAACGTCTG
CTTTCCTTCTCTTTCTAGAGCCCCATTTCTACTTATTCTCATTTTAATAGTGCCAAGATT
GTTCCTGTTCATGTGTAACTGTACAATAAGGGCTTTTAATCTAAAATATATTCAACATAA
GCTTATGTGAGTCTCTCGTTGGAAATAAAGAAATGGACTACAGCGGGCTTTGCAAATAAA
GCTGAAAAGGCAGACCGCGAGTGTGATGGTCAGTGCGAGATTGTCGTGGTGTCAGGAGCG
CCAGCGTGTCGGACTCTGCCTTCTCTGCTTGGCAGGAGGGTCTCCAACAGAACCTCTGAA
ATCAATCAAGCTGGTGGATTGGAGGTTACGGGCAAGGACATTTCACGCTAGTAAATGAAA
AATGAATGGAAGAAAGCAAAAAAGTTGTGATTTTGGAGGCGCTATTGTCTTATTTTTAAG
CCAAGTACAGTTATTCTGTAATCGCAGAAACAGAAATAAATATAAAAATTTAGGTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCCAGGTCGTCCAACAGCTTTGACTACATCCTGGCCGCCGACGTGGTCTATGCACA
CCCCTTCCTGGAAGAGCTCCTGCTCACCTTCGAGCACCTGTGCCGAGAAACCACCGTCAT
CCTCTGGGTCATGAAATTCAGGCTGGAAAAGGAAAACAGATTTGTAGATAGATTTCAGGA
GCTCTTTGACCTGGAGGAGATTTCCAGTTTCCCTAGCCTGAATATTAAGTTGTTTAAAGC
CACGAAGAAAAATCGGAGGAATGCGTGATATCCTCAAAGGAAGACTTGGCAAGTGGAGGC
AGTTTCCGGTAGATTATGGCTTTAACAAAGATCCTGGATAATCTGATGTAGCACTGACTT
TCCCCAGGGGAAACACACATATACACACACACACACACACACACACACACACACGCACGC
ACGCACGCACGCACACACACACACCCCTCACCTCAGACAGGGATTTTTCCCAGGTTCAGC
CCGGGGGTGCTAGGGGATGGCTACGCCGTTCCGTGTGCTAATTGGTTAGGACAACGTCTG
CTTTCCTTCTCTTTCTAGAGCCCCATTTCTACTTATTCTCATTTTAATAGTGCCAAGATT
GTTCCTGTTCATGTGTAACTGTACAATAAGGGCTTTTAATCTAAAATATATTCAACATAA
GCTTATGTGAGTCTCTCGTTGGAAATAAAGAAATGGACTACAGCGGGCTTTGCAAATAAA
GCTGAAAAGGCAGACCGCGAGTGTGATGGTCAGTGCGAGATTGTCGTGGTGTCAGGAGCG
CCAGCGTGTCGGACTCTGCCTTCTCTGCTTGGCAGGAGGGTCTCCAACAGAACCTCTGAA
ATCAATCAAGCTGGTGGATTGGAGGTTACGGGCAAGGACATTTCACGCTAGTAAATGAAA
AATGAATGGAAGAAAGCAAAAAAGTTGTGATTTTGGAGGCGCTATTGTCTTATTTTTAAG
CCAAGTACAGTTATTCTGTAATCGCAGAAACAGAAATAAATATAAAAATTTAGGTTGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|42660125|ref|XP_062872.4|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42660125|ref|XP_062872.4|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.799542

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.799542

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-402, gnl|bosTau2|chr12 (42509658-42509259)
               

               
               1-402, gnl|canFam2|chr22 (55338617-55338902)
               

               
               1-402, gnl|danRer3|chrUn (104936839-104936546)
               

               
               1-402, gnl|dasNov1|scaffold_1117 (133264-133549)
               

               
               1-402, gnl|echTel1|scaffold_300324 (77242-77528)
               

               
               1-402, gnl|fr1|chrUn (216080652-216080367)
               

               
               1-402, gnl|galGal2|chr1 (135422198-135421913)
               

               
               1-402, gnl|hg17|chr13 (102345726-102346011)
               

               
               1-402, gnl|Hg17|chr13 (102345768-102346189)
               

               
               1-402, gnl|loxAfr1|scaffold_3839 (86462-86177)
               

               
               1-402, gnl|mm7|chr1 (44447048-44446763)
               

               
               1-402, gnl|Mm7|chr1 (44447004-44446584)
               

               
               1-402, gnl|monDom2|scaffold_11 (48142899-48142614)
               

               
               1-402, gnl|oryCun1|scaffold_186108 (28589-28304)
               

               
               1-402, gnl|panTro1|chr14 (85737823-85738108)
               

               
               1-402, gnl|rheMac2|chr17 (83192317-83192602)
               

               
               1-402, gnl|rn3|chr9 (43337752-43338037)
               

               
               1-402, gnl|tetNig1|chr5 (8186784-8187069)
               

               
               1-402, gnl|xenTro1|scaffold_77 (2441251-2441545)
               


               
               407-1019, gnl|bosTau2|chr12 (42509288-42508656)
               

               
               407-1019, gnl|Hg17|chr13 (102346140-102346903)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-402, gnl|bosTau2|chr12 (42509658-42509259)
               

               
               1-402, gnl|canFam2|chr22 (55338617-55338902)
               

               
               1-402, gnl|danRer3|chrUn (104936839-104936546)
               

               
               1-402, gnl|dasNov1|scaffold_1117 (133264-133549)
               

               
               1-402, gnl|echTel1|scaffold_300324 (77242-77528)
               

               
               1-402, gnl|fr1|chrUn (216080652-216080367)
               

               
               1-402, gnl|galGal2|chr1 (135422198-135421913)
               

               
               1-402, gnl|hg17|chr13 (102345726-102346011)
               

               
               1-402, gnl|Hg17|chr13 (102345768-102346189)
               

               
               1-402, gnl|loxAfr1|scaffold_3839 (86462-86177)
               

               
               1-402, gnl|mm7|chr1 (44447048-44446763)
               

               
               1-402, gnl|Mm7|chr1 (44447004-44446584)
               

               
               1-402, gnl|monDom2|scaffold_11 (48142899-48142614)
               

               
               1-402, gnl|oryCun1|scaffold_186108 (28589-28304)
               

               
               1-402, gnl|panTro1|chr14 (85737823-85738108)
               

               
               1-402, gnl|rheMac2|chr17 (83192317-83192602)
               

               
               1-402, gnl|rn3|chr9 (43337752-43338037)
               

               
               1-402, gnl|tetNig1|chr5 (8186784-8187069)
               

               
               1-402, gnl|xenTro1|scaffold_77 (2441251-2441545)
               


               
               407-1019, gnl|bosTau2|chr12 (42509288-42508656)
               

               
               407-1019, gnl|Hg17|chr13 (102346140-102346903)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               bfe (0.449573)
               

               
               ste (0.405625)
               

               
               ton (0.351)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               isp (0.150376)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               ste (0.405625)
               

               
               ton (0.351)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               isp (0.150376)

	1-402, gnl\|bosTau2\|chr12 (42509658-42509259)
	1-402, gnl\|canFam2\|chr22 (55338617-55338902)
	1-402, gnl\|danRer3\|chrUn (104936839-104936546)
	1-402, gnl\|dasNov1\|scaffold_1117 (133264-133549)
	1-402, gnl\|echTel1\|scaffold_300324 (77242-77528)
	1-402, gnl\|fr1\|chrUn (216080652-216080367)
	1-402, gnl\|galGal2\|chr1 (135422198-135421913)
	1-402, gnl\|hg17\|chr13 (102345726-102346011)
	1-402, gnl\|Hg17\|chr13 (102345768-102346189)
	1-402, gnl\|loxAfr1\|scaffold_3839 (86462-86177)
	1-402, gnl\|mm7\|chr1 (44447048-44446763)
	1-402, gnl\|Mm7\|chr1 (44447004-44446584)
	1-402, gnl\|monDom2\|scaffold_11 (48142899-48142614)
	1-402, gnl\|oryCun1\|scaffold_186108 (28589-28304)
	1-402, gnl\|panTro1\|chr14 (85737823-85738108)
	1-402, gnl\|rheMac2\|chr17 (83192317-83192602)
	1-402, gnl\|rn3\|chr9 (43337752-43338037)
	1-402, gnl\|tetNig1\|chr5 (8186784-8187069)
	1-402, gnl\|xenTro1\|scaffold_77 (2441251-2441545)

	407-1019, gnl\|bosTau2\|chr12 (42509288-42508656)
	407-1019, gnl\|Hg17\|chr13 (102346140-102346903)

	bfe (0.449573)
	ste (0.405625)
	ton (0.351)
	vin (0.332557)
	tbr (0.308356)
	sme (0.305437)
	ssp (0.271039)
	nms (0.213858)
	ldo (0.194005)
	isp (0.150376)