Non-Coding RNA Search

Ss1.1-Mixn-0028g08.5

Sequence:


               
               GAGCCACACGCCATGGCCCTTCTCTGGGTTGTCCTTGGCTTCTACCTTTCTGGCAGCAGC
TTTGGCTGTGGGGTCCCCGCCATCGACCCCATGCTGAGCGGCCTGTCCAGGATCGTCAAT
GGGGAGGAGGCCGTGCCCGGCTCCTGGCCCTGGCAGGTGTCCCTGCAGACCAGCTCCGGC
TTCCACTTCTGCGGGGGCTCCCTCATCAGCGAGGCCTGGGTGGTCACCGCCGCCCACTGC
GAGGTCAGGAAGAGCCACCTCGTGGTGGCCGGCGTGTCTGATCTCAGCTCTGACGAGGAG
GCTGTCCAGGTGCTCAGGATCGCTGAGGTGGTTGAGCACCCCCTGTGGAACCTGCACGCC
TTGCGCAACGACATCGCCCTGCTGAAGCTGGCCACGCCCGCCCGCCTCTCGGGGGCCGTG
TCCCCCGTGTGCCTGCCCAGCACCAACACCAGCTTCCCTACGGGTTCCCTGTGCGCCACC
ACGGGCTGGGGCAAGACCCGGCACAACGCCCTCAAGACCCCCGACAAGCTGCAGCAGGCC
GCCCTGCCCATCGTGTCCAGCGCCGACTGCAAGTCCTACTGGGGCAGCAAGGTCACGGAC
GTGATGATCTGTGCTGGCGCCAGCGGCGTCTCCACCTGCATGGGTGACTCTGGTGGCCCC
CTGGTCTGCCAGAAGGACGGAGCCTGGACCCTGGCGGGCATCGTGTCCTGGGGCAGTGGC
CGGTGTCTTCCATTCTCACCAGGCGTGTATGCCCGGGTCACTAAGTTTGTTCCCTGGATT
CTTGAAGTTCTGAAGGCCAACTGAGCCCCTGTCCAACCCCAGCACCCATCTGTGCAAAAC
TCAAATAAACCTCCTTGCATCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCACACGCCATGGCCCTTCTCTGGGTTGTCCTTGGCTTCTACCTTTCTGGCAGCAGC
TTTGGCTGTGGGGTCCCCGCCATCGACCCCATGCTGAGCGGCCTGTCCAGGATCGTCAAT
GGGGAGGAGGCCGTGCCCGGCTCCTGGCCCTGGCAGGTGTCCCTGCAGACCAGCTCCGGC
TTCCACTTCTGCGGGGGCTCCCTCATCAGCGAGGCCTGGGTGGTCACCGCCGCCCACTGC
GAGGTCAGGAAGAGCCACCTCGTGGTGGCCGGCGTGTCTGATCTCAGCTCTGACGAGGAG
GCTGTCCAGGTGCTCAGGATCGCTGAGGTGGTTGAGCACCCCCTGTGGAACCTGCACGCC
TTGCGCAACGACATCGCCCTGCTGAAGCTGGCCACGCCCGCCCGCCTCTCGGGGGCCGTG
TCCCCCGTGTGCCTGCCCAGCACCAACACCAGCTTCCCTACGGGTTCCCTGTGCGCCACC
ACGGGCTGGGGCAAGACCCGGCACAACGCCCTCAAGACCCCCGACAAGCTGCAGCAGGCC
GCCCTGCCCATCGTGTCCAGCGCCGACTGCAAGTCCTACTGGGGCAGCAAGGTCACGGAC
GTGATGATCTGTGCTGGCGCCAGCGGCGTCTCCACCTGCATGGGTGACTCTGGTGGCCCC
CTGGTCTGCCAGAAGGACGGAGCCTGGACCCTGGCGGGCATCGTGTCCTGGGGCAGTGGC
CGGTGTCTTCCATTCTCACCAGGCGTGTATGCCCGGGTCACTAAGTTTGTTCCCTGGATT
CTTGAAGTTCTGAAGGCCAACTGAGCCCCTGTCCAACCCCAGCACCCATCTGTGCAAAAC
TCAAATAAACCTCCTTGCATCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13385032|ref|NP_079859.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13385032|ref|NP_079859.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               64-168, gnl|bosTau2|chr18 (5870224-5870328)
               

               
               64-168, gnl|Hg17|chr16 (73797593-73797489)
               

               
               64-168, gnl|Mm7|chr8 (110306286-110306386)
               


               
               321-508, gnl|bosTau2|chr18 (5870887-5871074)
               

               
               321-508, gnl|Hg17|chr16 (73814842-73815011)
               

               
               321-508, gnl|Mm7|chr8 (110288776-110288590)
               


               
               628-862, gnl|bosTau2|chr18 (5872638-5872871)
               

               
               628-862, gnl|Hg17|chr16 (73795734-73795478)
               

               
               628-862, gnl|Mm7|chr8 (110286809-110286589)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-168, gnl|bosTau2|chr18 (5870224-5870328)
               

               
               64-168, gnl|Hg17|chr16 (73797593-73797489)
               

               
               64-168, gnl|Mm7|chr8 (110306286-110306386)
               


               
               321-508, gnl|bosTau2|chr18 (5870887-5871074)
               

               
               321-508, gnl|Hg17|chr16 (73814842-73815011)
               

               
               321-508, gnl|Mm7|chr8 (110288776-110288590)
               


               
               628-862, gnl|bosTau2|chr18 (5872638-5872871)
               

               
               628-862, gnl|Hg17|chr16 (73795734-73795478)
               

               
               628-862, gnl|Mm7|chr8 (110286809-110286589)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	64-168, gnl\|bosTau2\|chr18 (5870224-5870328)
	64-168, gnl\|Hg17\|chr16 (73797593-73797489)
	64-168, gnl\|Mm7\|chr8 (110306286-110306386)

	321-508, gnl\|bosTau2\|chr18 (5870887-5871074)
	321-508, gnl\|Hg17\|chr16 (73814842-73815011)
	321-508, gnl\|Mm7\|chr8 (110288776-110288590)

	628-862, gnl\|bosTau2\|chr18 (5872638-5872871)
	628-862, gnl\|Hg17\|chr16 (73795734-73795478)
	628-862, gnl\|Mm7\|chr8 (110286809-110286589)