Non-Coding RNA Search

Ss1.1-Mixn-0028g14.5

Sequence:


               
               AGATCATTTGATTGGAATTGGCATAGCTCCGCTTCAGTTCCTTCCGGGAGAAAATGCAGA
TTCCTTGGGCCTCTCTGGCAGAGAAACATTTTCTTTAACATTTCCCGAAGAACTGTCTCC
TGGAGTTACATTAAATATAAAGACAAGCACTGGAAAAATATTCAGCGTGATTGCTTCGTT
TGAAAATGATGTGGAAATAATATTATACAAACATGGAGGATTATTAAACTTTGTGGCACG
AAAATTCTCATAGTATCTATTCACCATGGATACCTTTCATAACTGGTAACTGCAAACAAA
GCCTTTTGTGCTGGACCCAGGAATCCTTACCATGGAGCTGCAGGTAGTCCCGGTATGCTC
ACTTATCTCATCCATGGATGTAAATGATGATGAATCAACGTAGTGACTGAAATGAAATCT
TCTTGATTTTAAATAATATACGAATGGTGCTATTAACATTGCTAAAATCAATGTGTGAAG
TGTGTTGTGGAAGAGACCTGTAAGTATGGGGGGATATTTTATCAGACCATTTTGTAAATA
AAGGCAGAATTTGAACTTGTGTTGAAAATTCTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCATTTGATTGGAATTGGCATAGCTCCGCTTCAGTTCCTTCCGGGAGAAAATGCAGA
TTCCTTGGGCCTCTCTGGCAGAGAAACATTTTCTTTAACATTTCCCGAAGAACTGTCTCC
TGGAGTTACATTAAATATAAAGACAAGCACTGGAAAAATATTCAGCGTGATTGCTTCGTT
TGAAAATGATGTGGAAATAATATTATACAAACATGGAGGATTATTAAACTTTGTGGCACG
AAAATTCTCATAGTATCTATTCACCATGGATACCTTTCATAACTGGTAACTGCAAACAAA
GCCTTTTGTGCTGGACCCAGGAATCCTTACCATGGAGCTGCAGGTAGTCCCGGTATGCTC
ACTTATCTCATCCATGGATGTAAATGATGATGAATCAACGTAGTGACTGAAATGAAATCT
TCTTGATTTTAAATAATATACGAATGGTGCTATTAACATTGCTAAAATCAATGTGTGAAG
TGTGTTGTGGAAGAGACCTGTAAGTATGGGGGGATATTTTATCAGACCATTTTGTAAATA
AAGGCAGAATTTGAACTTGTGTTGAAAATTCTTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6562639|emb|CAB62825.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6562639|emb|CAB62825.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               138-575, gnl|bosTau2|chr21 (20382691-20382257)
               

               
               138-575, gnl|Hg17|chr15 (76577425-76577858)
               

               
               138-575, gnl|Mm7|chr9 (54938930-54939353)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-575, gnl|bosTau2|chr21 (20382691-20382257)
               

               
               138-575, gnl|Hg17|chr15 (76577425-76577858)
               

               
               138-575, gnl|Mm7|chr9 (54938930-54939353)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	138-575, gnl\|bosTau2\|chr21 (20382691-20382257)
	138-575, gnl\|Hg17\|chr15 (76577425-76577858)
	138-575, gnl\|Mm7\|chr9 (54938930-54939353)

	nms (0.213858)
	mcp (0.170648)
	isp (0.150376)
	bfe (0.149858)
	kid (0.129735)
	sug (0.127291)