Non-Coding RNA Search

Ss1.1-Mixn-0028h14.5.5

Sequence:


               
               TGATTCCAGCTGCCTTGCTCACCACTGCCTCAGAAGTCACTGATCACCCTCGCCCAAGAA
CACGGCCTCTCTCAGGCACACTCATCCACCACAAAGAAGGGCATTTGGGAGAAAGTGTGG
CCTCTGCACACTTCTGGCTGGAGCCCACTGCACTCTGGGTTGACTGGACCAAGTGCAGGC
AAGGAAATTCTCAAGCAGCAATCTGGAACTGAAACACTGCACAGGGTTTGGAAAGTAGAA
ATGAAAAGCCACATGATATAATTTAAAAATAAAGGGGATGGGTTCTCTGGAAATTTTCAT
TTGTCACCCCCCCTTAGGTGGTCAAGCCGTTCCACATTCACACGAAAGGAAGTCCCCATT
TGGGGCTGAAATCTCAGAGTCAGTGTTTTATTATACTGGTTAAATGTCCACAAAATGACT
TTATAGGAGTTTTATTTTTAAAAGTCCATCTTGGTGGATCTACATGAGAGAGTCCCATCC
TTGCCTTAGAGGTGTTGAGAATCAGAGCAGAGCTCTCATCTCTGATGCACAGAACCAAGG
GTTGCCTTTGCTCAGAGGCTAGAGGCAGCCATCCACGTTTACAAAACACCGAAAAAGTAC
TTTTCACTGGAATCTGGGGTTTAAGTTTTTCTTATTTCATTGTGATTCTTCCAAGGAAAG
AGGGAAGACTGAGTTAATAATGCCTTTCCTCTCAAGCACTTTTTCAGTAAAGTACATCTT
CACCTTTTGGAAGGCATCTCTGATAAAAAGGCTTCCTTAGAACCTTAGGACGAGTGTTAC
CCAGAGATGCTCCTGGCCCTGGTGGCTGCAGACCAACACTCAAGCCTCCGTCAGGTGGCT
TCCAAGTCGGAATTGCACTTTAATCCACTCATCCTCAATTCTTGGGGCGTTATGGGATAG
TGGGCCTGGGAACCCATCTCATTCTTAGCTGCCAAAGAATTACCCAAAAGCACATCAAAT
GCCAACACTCCTCCCACACAGTGGGGGTAAGGAACTTGTATCCCAAAACATACTCCTTAT
AGTGTCTGCTGCAACATTGGGAATGTGTTATTTTTAACTTCAGGATTTAAATAAAGTAAA
CACTATGACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTCCAGCTGCCTTGCTCACCACTGCCTCAGAAGTCACTGATCACCCTCGCCCAAGAA
CACGGCCTCTCTCAGGCACACTCATCCACCACAAAGAAGGGCATTTGGGAGAAAGTGTGG
CCTCTGCACACTTCTGGCTGGAGCCCACTGCACTCTGGGTTGACTGGACCAAGTGCAGGC
AAGGAAATTCTCAAGCAGCAATCTGGAACTGAAACACTGCACAGGGTTTGGAAAGTAGAA
ATGAAAAGCCACATGATATAATTTAAAAATAAAGGGGATGGGTTCTCTGGAAATTTTCAT
TTGTCACCCCCCCTTAGGTGGTCAAGCCGTTCCACATTCACACGAAAGGAAGTCCCCATT
TGGGGCTGAAATCTCAGAGTCAGTGTTTTATTATACTGGTTAAATGTCCACAAAATGACT
TTATAGGAGTTTTATTTTTAAAAGTCCATCTTGGTGGATCTACATGAGAGAGTCCCATCC
TTGCCTTAGAGGTGTTGAGAATCAGAGCAGAGCTCTCATCTCTGATGCACAGAACCAAGG
GTTGCCTTTGCTCAGAGGCTAGAGGCAGCCATCCACGTTTACAAAACACCGAAAAAGTAC
TTTTCACTGGAATCTGGGGTTTAAGTTTTTCTTATTTCATTGTGATTCTTCCAAGGAAAG
AGGGAAGACTGAGTTAATAATGCCTTTCCTCTCAAGCACTTTTTCAGTAAAGTACATCTT
CACCTTTTGGAAGGCATCTCTGATAAAAAGGCTTCCTTAGAACCTTAGGACGAGTGTTAC
CCAGAGATGCTCCTGGCCCTGGTGGCTGCAGACCAACACTCAAGCCTCCGTCAGGTGGCT
TCCAAGTCGGAATTGCACTTTAATCCACTCATCCTCAATTCTTGGGGCGTTATGGGATAG
TGGGCCTGGGAACCCATCTCATTCTTAGCTGCCAAAGAATTACCCAAAAGCACATCAAAT
GCCAACACTCCTCCCACACAGTGGGGGTAAGGAACTTGTATCCCAAAACATACTCCTTAT
AGTGTCTGCTGCAACATTGGGAATGTGTTATTTTTAACTTCAGGATTTAAATAAAGTAAA
CACTATGACACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-1055, gnl|bosTau2|chr22 (42108051-42109102)
               

               
               6-1055, gnl|Hg17|chr3 (45935505-45934438)
               

               
               6-1055, gnl|Mm7|chr9 (123508792-123507853)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1055, gnl|bosTau2|chr22 (42108051-42109102)
               

               
               6-1055, gnl|Hg17|chr3 (45935505-45934438)
               

               
               6-1055, gnl|Mm7|chr9 (123508792-123507853)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)

	6-1055, gnl\|bosTau2\|chr22 (42108051-42109102)
	6-1055, gnl\|Hg17\|chr3 (45935505-45934438)
	6-1055, gnl\|Mm7\|chr9 (123508792-123507853)

	pgl (0.236967)
	mas (0.210305)
	mcp (0.170648)
	ste (0.135208)
	ute (0.132784)
	cbl (0.114797)