Non-Coding RNA Search

Ss1.1-Mixn-0028i17.5

Sequence:


               
               GAGGAAACAGGCCGAGGCGGGTAGGAGTCTTCACTGCGTCAGGGGTGTGTGCACCAGCTT
CCAGACGAGGTTGCATTTACTCTCAGTGGACACGAATCAGAACCAATGGTCCCCCCATCA
CGTCCCACCAAGCATGGCCTGCTGAGCTAAACCAGTTCATGCCTCCCTTAATTTTTTATG
ACGATTGTTGTTGTTATTTTCGTTATTATTATTTGGGGTTTCTTGTGTTTTGGGTCTTCT
TTGCAGCTCTCCACACTAAAACTCACAACGTCGTGGGGAGAAGCCATGGACTCTACGCTG
GGGTGAGATGTGGCAGGAACCGGCCCCGCCGCCGGGGCCGGGGCGCCGCTGGCGATAGTC
CGGGTCGGCGTAAAGCTTTATTTAGCCTCCGTCTGCACCCTCGGAGTCCACAAGGTCTCG
CCGCATCTTACTAGCGAGGTCGAGAGGCGTAGCATTCGTTCGTTGCTCTGTCCCTCCCCC
AATATTAAACTGTGAAATCTGTGATTTGTTTAACTCTGGGTGAATCATAGCTTAGTCTGC
ATGTCCAGCTAATTCGTTTCCATACATTTCGTTTGATTCTCTTTCTCCTTCTCTCAGGGC
TTTTACAAAGAGAAATATATATATATATGGATCTTCTGAAACGTTTTTCGAGGTGCAAGT
CTCTCTCTTTCGTTTTTTTCTCCTTGATTTATGGACACGATGCTGAAATGCAATCACTAC
ATGAAACTCCCGGCTGTGAAAACAAAACAAAAACCCCGAAGGGCTGTTTTTTCCACCAGC
CCCGGGGGAAGCTACGTGACAGTCGGGTGCCGGTGTCAGAAAGTTTCACCATTCTTTCCA
CCCTCTGTTCCTCTCTTTCCTCCAGAAGGAAGTTGATCCTGGTGATTTCAGCCCAATGCA
TTAAACAGGAAACAATAATAAATGTGTAGAATTCATATTTTTCTAAAGGGAACTTAAAAC
TGCTGCTACATGTTATGTACAAAACTGGTTTATGCCACATGAACAGAGAATCACAAGTTG
CGTTTTGGTACTTTTGTTCCTCTTTGTGTTCCGTTGTATAGTACTTCCAAATTCAAAATG
AGAAGAAAAGCTGTTCTGTATCAAACCATCTAAGCAATAAATGTTATATTTTAAAAACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAAACAGGCCGAGGCGGGTAGGAGTCTTCACTGCGTCAGGGGTGTGTGCACCAGCTT
CCAGACGAGGTTGCATTTACTCTCAGTGGACACGAATCAGAACCAATGGTCCCCCCATCA
CGTCCCACCAAGCATGGCCTGCTGAGCTAAACCAGTTCATGCCTCCCTTAATTTTTTATG
ACGATTGTTGTTGTTATTTTCGTTATTATTATTTGGGGTTTCTTGTGTTTTGGGTCTTCT
TTGCAGCTCTCCACACTAAAACTCACAACGTCGTGGGGAGAAGCCATGGACTCTACGCTG
GGGTGAGATGTGGCAGGAACCGGCCCCGCCGCCGGGGCCGGGGCGCCGCTGGCGATAGTC
CGGGTCGGCGTAAAGCTTTATTTAGCCTCCGTCTGCACCCTCGGAGTCCACAAGGTCTCG
CCGCATCTTACTAGCGAGGTCGAGAGGCGTAGCATTCGTTCGTTGCTCTGTCCCTCCCCC
AATATTAAACTGTGAAATCTGTGATTTGTTTAACTCTGGGTGAATCATAGCTTAGTCTGC
ATGTCCAGCTAATTCGTTTCCATACATTTCGTTTGATTCTCTTTCTCCTTCTCTCAGGGC
TTTTACAAAGAGAAATATATATATATATGGATCTTCTGAAACGTTTTTCGAGGTGCAAGT
CTCTCTCTTTCGTTTTTTTCTCCTTGATTTATGGACACGATGCTGAAATGCAATCACTAC
ATGAAACTCCCGGCTGTGAAAACAAAACAAAAACCCCGAAGGGCTGTTTTTTCCACCAGC
CCCGGGGGAAGCTACGTGACAGTCGGGTGCCGGTGTCAGAAAGTTTCACCATTCTTTCCA
CCCTCTGTTCCTCTCTTTCCTCCAGAAGGAAGTTGATCCTGGTGATTTCAGCCCAATGCA
TTAAACAGGAAACAATAATAAATGTGTAGAATTCATATTTTTCTAAAGGGAACTTAAAAC
TGCTGCTACATGTTATGTACAAAACTGGTTTATGCCACATGAACAGAGAATCACAAGTTG
CGTTTTGGTACTTTTGTTCCTCTTTGTGTTCCGTTGTATAGTACTTCCAAATTCAAAATG
AGAAGAAAAGCTGTTCTGTATCAAACCATCTAAGCAATAAATGTTATATTTTAAAAACGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               191-289, + strand, RNAz p=0.952175

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-289, + strand, RNAz p=0.952175

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               117-1140, gnl|bosTau2|chr23 (34947454-34946418)
               

               
               117-1140, gnl|Hg17|chr6 (7196156-7197210)
               

               
               117-1140, gnl|Mm7|chr13 (37369701-37370748)
               


               
               378-609, gnl|bosTau2|chr1 (82487147-82487377)
               

               
               378-609, gnl|Hg17|chr6 (7196426-7196665)
               

               
               378-609, gnl|Mm7|chr13 (37369976-37370211)
               


               
               786-1051, gnl|bosTau2|chr1 (82489629-82489890)
               

               
               786-1051, gnl|Hg17|chr6 (7196844-7197122)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-1140, gnl|bosTau2|chr23 (34947454-34946418)
               

               
               117-1140, gnl|Hg17|chr6 (7196156-7197210)
               

               
               117-1140, gnl|Mm7|chr13 (37369701-37370748)
               


               
               378-609, gnl|bosTau2|chr1 (82487147-82487377)
               

               
               378-609, gnl|Hg17|chr6 (7196426-7196665)
               

               
               378-609, gnl|Mm7|chr13 (37369976-37370211)
               


               
               786-1051, gnl|bosTau2|chr1 (82489629-82489890)
               

               
               786-1051, gnl|Hg17|chr6 (7196844-7197122)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               csk (0.281492)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	117-1140, gnl\|bosTau2\|chr23 (34947454-34946418)
	117-1140, gnl\|Hg17\|chr6 (7196156-7197210)
	117-1140, gnl\|Mm7\|chr13 (37369701-37370748)

	378-609, gnl\|bosTau2\|chr1 (82487147-82487377)
	378-609, gnl\|Hg17\|chr6 (7196426-7196665)
	378-609, gnl\|Mm7\|chr13 (37369976-37370211)

	786-1051, gnl\|bosTau2\|chr1 (82489629-82489890)
	786-1051, gnl\|Hg17\|chr6 (7196844-7197122)

	csk (0.281492)
	cga (0.279096)
	hea (0.204499)
	sag (0.182715)
	sto (0.179824)
	ton (0.1755)
	fhi (0.169578)
	lun (0.150489)
	ova (0.129132)
	pgl (0.118483)
	eje (0.0988338)
	ldo (0.0970026)