Non-Coding RNA Search

Ss1.1-Mixn-0028k07.5

Sequence:


               
               GTAGCTTTCCGGGAGAAAAGGCAAAGTGCGCTCAAAACAGAAGCCACAGCTCCTCCTGCT
GCATTTCTTTCCTAACGTGAATCCCACACTTCACAAGATGTGCAAAGGACTCGCAGGTCT
GCCGGCTTCTTGCTTGAGGAGGTAAGATGATTTTCACGCACTAAACCGTGTTAAACTTTC
AGATAGACTTTTTTAGTTATGTGCGTATCCTATTTACTAACCTGGTTGTTTAGAGTTAGA
AACAGTGTGGTCAGGAAAGCCTGAGCCTCCTAGCTTTCCTCCAAGACTAGCTAGAAATTG
TGACTTGGAAAGTGTTCTCCCCCAAATTTGGAACTCATGTGTTGCTGTGTATGACCTTGG
TTTGGAGGACTGTTCAGTTCCTCTGGCCAAGCTTGTTCAAATTGAGAAGTGATATAAGGT
TTTTGTGCTTTATACAGCAGTCTGCAATACCTCTACCTGTGATTACTGTTATTTGAATGT
CACTGAGCTACTTAGAATCATGGGTCTGGGCTTTCTGATGGTATACTAGATTTCATTTTG
AGAAGGACACCCCAGAATGAAGTTTGACTACATCACCAGAAAAGCACTATGCTGTCTGTG
TGATGCTGCAGTATCTTTTGCCTCATGTTCTTAAAAGCAAATGCTACAATAAAATAAGTT
TCAAAAGTATATATCTATTCTCTTTCTGCCTCTGCCTCTAGTTCTTGAAATGTCATATGT
GAGTGGTGGTTGAGAAGTATTGATCACAACAAATCAGTGAAGGGCTCTGTAAAAAATCTC
ATCTTTAAGACATTGTTTTGTCAATGTTTCATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGCTTTCCGGGAGAAAAGGCAAAGTGCGCTCAAAACAGAAGCCACAGCTCCTCCTGCT
GCATTTCTTTCCTAACGTGAATCCCACACTTCACAAGATGTGCAAAGGACTCGCAGGTCT
GCCGGCTTCTTGCTTGAGGAGGTAAGATGATTTTCACGCACTAAACCGTGTTAAACTTTC
AGATAGACTTTTTTAGTTATGTGCGTATCCTATTTACTAACCTGGTTGTTTAGAGTTAGA
AACAGTGTGGTCAGGAAAGCCTGAGCCTCCTAGCTTTCCTCCAAGACTAGCTAGAAATTG
TGACTTGGAAAGTGTTCTCCCCCAAATTTGGAACTCATGTGTTGCTGTGTATGACCTTGG
TTTGGAGGACTGTTCAGTTCCTCTGGCCAAGCTTGTTCAAATTGAGAAGTGATATAAGGT
TTTTGTGCTTTATACAGCAGTCTGCAATACCTCTACCTGTGATTACTGTTATTTGAATGT
CACTGAGCTACTTAGAATCATGGGTCTGGGCTTTCTGATGGTATACTAGATTTCATTTTG
AGAAGGACACCCCAGAATGAAGTTTGACTACATCACCAGAAAAGCACTATGCTGTCTGTG
TGATGCTGCAGTATCTTTTGCCTCATGTTCTTAAAAGCAAATGCTACAATAAAATAAGTT
TCAAAAGTATATATCTATTCTCTTTCTGCCTCTGCCTCTAGTTCTTGAAATGTCATATGT
GAGTGGTGGTTGAGAAGTATTGATCACAACAAATCAGTGAAGGGCTCTGTAAAAAATCTC
ATCTTTAAGACATTGTTTTGTCAATGTTTCATCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               562-676, - strand, RNAz p=0.738378

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               562-676, - strand, RNAz p=0.738378

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-485, gnl|bosTau2|chr3 (6807527-6807041)
               

               
               1-485, gnl|Hg17|chr1 (159770832-159771330)
               

               
               1-485, gnl|Mm7|chr1 (169724096-169723688)
               


               
               562-816, gnl|bosTau2|chr3 (6806983-6806739)
               

               
               562-816, gnl|Hg17|chr1 (159771407-159771661)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-485, gnl|bosTau2|chr3 (6807527-6807041)
               

               
               1-485, gnl|Hg17|chr1 (159770832-159771330)
               

               
               1-485, gnl|Mm7|chr1 (169724096-169723688)
               


               
               562-816, gnl|bosTau2|chr3 (6806983-6806739)
               

               
               562-816, gnl|Hg17|chr1 (159771407-159771661)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-485, gnl\|bosTau2\|chr3 (6807527-6807041)
	1-485, gnl\|Hg17\|chr1 (159770832-159771330)
	1-485, gnl\|Mm7\|chr1 (169724096-169723688)

	562-816, gnl\|bosTau2\|chr3 (6806983-6806739)
	562-816, gnl\|Hg17\|chr1 (159771407-159771661)