Ss1.1-Mixn-0028l01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATCCTTCCACCAAAAAAAAAAAAAAAAAATCCCTTCCTTGTGGGATTCTTGGGCATC TCCTGCCTCCCTCACTCTCACGGTAATTAACGTCTTAATTGGCTGTTGCCTGGGGAACAA GAGAGCTGCTGCAGGCAGATGACCTCATGGGGGATGGAGGGAGGTGAGGTGCCCAGGTGG CTATTTGCCCTGCAGAGCTGGGAGTTCCCCCTTTCCCCTCTGCCCTGTTCTCCCCTCACC TTTAGCATTTCAGCTTGGTGGGGAAACAGAGGCCCAGGGCAGAGAACTAAGCGGGTATAA GGCCAGGTGGCCTGCTCCTTTTGTGGGCTCTAGCACAGGTGGGTGCACCCTCCCCCAACC CAGCTCCCACTGGCCCTGCAGTCTTGGGCTGGGGCTTGGAAAGAGGAAGAGGCTTGCCTA GGGCTGGGCTAGCACGCCGTGCACTTTGACCCCAGCTCCTTGCCAGCACGGCTGCTAACA GACTGCCACTTACATGCGCCTTGCAGGCGCTCCCAGAGTGGCCATGGAAGGAGCTGGGCC TCACATCATCCACCTCCACACTGCCTCCTGGCCAGCTGCCCACCCCAGTGCCAGGTGGGA GAGGGAGCGGAACAGCCAGCCCCTTCCAGGTGGCAGTCGGAAGGGTTTTTTGTTTTTGTT TTTGTTTCTGTTGCCATTTGTGTAAATACTAGTCTTTTTGGAAAAAAAATAATGTAAAGA TGTTTTGTATAAACTCTGAATTATTTTCTTGTTGCTTTTTTCTTAGAAAAAATGAGAACT AAAAAAAAAAATTTTAACCACATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATCCTTCCACCAAAAAAAAAAAAAAAAAATCCCTTCCTTGTGGGATTCTTGGGCATC TCCTGCCTCCCTCACTCTCACGGTAATTAACGTCTTAATTGGCTGTTGCCTGGGGAACAA GAGAGCTGCTGCAGGCAGATGACCTCATGGGGGATGGAGGGAGGTGAGGTGCCCAGGTGG CTATTTGCCCTGCAGAGCTGGGAGTTCCCCCTTTCCCCTCTGCCCTGTTCTCCCCTCACC TTTAGCATTTCAGCTTGGTGGGGAAACAGAGGCCCAGGGCAGAGAACTAAGCGGGTATAA GGCCAGGTGGCCTGCTCCTTTTGTGGGCTCTAGCACAGGTGGGTGCACCCTCCCCCAACC CAGCTCCCACTGGCCCTGCAGTCTTGGGCTGGGGCTTGGAAAGAGGAAGAGGCTTGCCTA GGGCTGGGCTAGCACGCCGTGCACTTTGACCCCAGCTCCTTGCCAGCACGGCTGCTAACA GACTGCCACTTACATGCGCCTTGCAGGCGCTCCCAGAGTGGCCATGGAAGGAGCTGGGCC TCACATCATCCACCTCCACACTGCCTCCTGGCCAGCTGCCCACCCCAGTGCCAGGTGGGA GAGGGAGCGGAACAGCCAGCCCCTTCCAGGTGGCAGTCGGAAGGGTTTTTTGTTTTTGTT TTTGTTTCTGTTGCCATTTGTGTAAATACTAGTCTTTTTGGAAAAAAAATAATGTAAAGA TGTTTTGTATAAACTCTGAATTATTTTCTTGTTGCTTTTTTCTTAGAAAAAATGAGAACT AAAAAAAAAAATTTTAACCACATG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-301, - strand, RNAz p=0.997313 | |
| 438-677, - strand, RNAz p=0.993329 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-301, - strand, RNAz p=0.997313 | |
| 438-677, - strand, RNAz p=0.993329 |
| Predicted microRNA(s): 4 entry(ies) | More info |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
| 481-595, + strand, RNAmicro p=0.999981 | |
| 206-328, - strand, RNAmicro p=0.999974 | |
| 64-164, + strand, RNAmicro p=0.999005 | |
| 224-313, + strand, RNAmicro p=0.998684 |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 481-595, + strand, RNAmicro p=0.999981 | |
| 206-328, - strand, RNAmicro p=0.999974 | |
| 64-164, + strand, RNAmicro p=0.999005 | |
| 224-313, + strand, RNAmicro p=0.998684 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 33-301, 288951 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF777123.1|), blast E-value=0, identity=95.2% | |
| 33-301, BE04009A2D04 BE04 Normalized and Subtracted bovine embryonic and (gb|CN436501.1|), blast E-value=0, identity=95.2% | |
| 33-301, BovGen_00591 normal cattle brain Bos taurus cDNA clone (gb|CO872266.1|), blast E-value=0, identity=95.2% | |
| 33-301, BovGen_03476 normal cattle brain Bos taurus cDNA clone (gb|CO875151.1|), blast E-value=0, identity=95.2% | |
| 33-301, 1234930 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN285121.1|), blast E-value=0, identity=94.83% | |
| 33-301, LB0222.CR_O21 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|DV850978.1|), blast E-value=0, identity=94.83% | |
| 439-644, EST15998 Aorta endothelial cells, TNF alpha-treated Homo sapiens (gb|AA303391.1|), blast E-value=0, identity=95.15% | |
| 439-644, UI-R-BT1-bmy-c-07-0-UI.s1 UI-R-BT1 Rattus norvegicus cDNA clone (gb|BF412072.1|), blast E-value=0, identity=95.15% | |
| 439-644, 180255 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|DY753120.1|), blast E-value=0, identity=95.63% | |
| 439-644, 291168 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|EB517945.1|), blast E-value=0, identity=95.63% | |
| 439-644, 292814 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|EB519333.1|), blast E-value=0, identity=95.63% | |
| 439-644, 303040 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|EB528452.1|), blast E-value=0, identity=95.63% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 33-301, 288951 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF777123.1|), blast E-value=0, identity=95.2% | |
| 33-301, BE04009A2D04 BE04 Normalized and Subtracted bovine embryonic and (gb|CN436501.1|), blast E-value=0, identity=95.2% | |
| 33-301, BovGen_00591 normal cattle brain Bos taurus cDNA clone (gb|CO872266.1|), blast E-value=0, identity=95.2% | |
| 33-301, BovGen_03476 normal cattle brain Bos taurus cDNA clone (gb|CO875151.1|), blast E-value=0, identity=95.2% | |
| 33-301, 1234930 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN285121.1|), blast E-value=0, identity=94.83% | |
| 33-301, LB0222.CR_O21 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|DV850978.1|), blast E-value=0, identity=94.83% | |
| 439-644, EST15998 Aorta endothelial cells, TNF alpha-treated Homo sapiens (gb|AA303391.1|), blast E-value=0, identity=95.15% | |
| 439-644, UI-R-BT1-bmy-c-07-0-UI.s1 UI-R-BT1 Rattus norvegicus cDNA clone (gb|BF412072.1|), blast E-value=0, identity=95.15% | |
| 439-644, 180255 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|DY753120.1|), blast E-value=0, identity=95.63% | |
| 439-644, 291168 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|EB517945.1|), blast E-value=0, identity=95.63% | |
| 439-644, 292814 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|EB519333.1|), blast E-value=0, identity=95.63% | |
| 439-644, 303040 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb|EB528452.1|), blast E-value=0, identity=95.63% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-791, gnl|bosTau2|chr2 (49659688-49660475) | |
| 1-791, gnl|Hg17|chrX (67844212-67845002) | |
| 1-791, gnl|Mm7|chrX (94475570-94476355) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-791, gnl|bosTau2|chr2 (49659688-49660475) | |
| 1-791, gnl|Hg17|chrX (67844212-67845002) | |
| 1-791, gnl|Mm7|chrX (94475570-94476355) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nep (0.36785) | |
| jej (0.296765) | |
| eru (0.240096) | |
| col (0.195008) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| jej (0.296765) | |
| eru (0.240096) | |
| col (0.195008) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) |