Non-Coding RNA Search

Ss1.1-Mixn-0028l17.5

Sequence:


               
               CGCTCGCACGTGGCCCCGGCGGCCGCCATGGCGGACAGCGGCCCCGCGGGGGGCGCGGCG
TTGGCGGCCCCGGCCCCGGGGCCGGGCAGTGGTGGCGCAGGGCCCCGCGTCTACTTTCAG
AGCCCCCCTGGGGCAGCGGGCGAGGGTCCGGGAGGCGCGGACGACGAGGGCCCAGTGAGA
CGCCAAGGGAAGGTCACGGTCAAGTACGACCGCAAGGAGCTACGGAAGCGCCTCAACCTG
GAGGAGTGGATCCTGGAGCAGCTCACTCGCCTCTACGACTGCCAGGAAGAGGAGATCCCG
GAGCTGGAGATTGATGTGGATGAACTCCTGGACATGGAGAGCGATGATACCCGGGCTGCC
AGGGTCAAGGAGCTGCTGGTTGACTGTTACAAACCCACTGAGGCCTTCATCTCTGGCCTG
CTGGACAAGATCCGGGGCATGCAGAAGCTGAGCACACCCCAGAAGAAGTAAGGGTCCTCG
ACCCAGGTGAATGGTGGCTCCCACAGGACAATCGCTGCCCCCCGACCTCGTAGCAACAGC
AATACGGGGGGGCCCTGCGGCCAGGCCTGGTGCCATGAGCAGGGCTCCCCGTGCCCCTGG
CCCAGGGGCCTTTTCCCTGCCCCCTCAGTTTTCCATTTTCGGGGTTTTTTATTATTATTA
AACTGATGGGACTTTTTGTGTTTTTATATTGACTGCGGCGCGGGCCCTTTAATAAAGCTA
GGCTACACCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTCGCACGTGGCCCCGGCGGCCGCCATGGCGGACAGCGGCCCCGCGGGGGGCGCGGCG
TTGGCGGCCCCGGCCCCGGGGCCGGGCAGTGGTGGCGCAGGGCCCCGCGTCTACTTTCAG
AGCCCCCCTGGGGCAGCGGGCGAGGGTCCGGGAGGCGCGGACGACGAGGGCCCAGTGAGA
CGCCAAGGGAAGGTCACGGTCAAGTACGACCGCAAGGAGCTACGGAAGCGCCTCAACCTG
GAGGAGTGGATCCTGGAGCAGCTCACTCGCCTCTACGACTGCCAGGAAGAGGAGATCCCG
GAGCTGGAGATTGATGTGGATGAACTCCTGGACATGGAGAGCGATGATACCCGGGCTGCC
AGGGTCAAGGAGCTGCTGGTTGACTGTTACAAACCCACTGAGGCCTTCATCTCTGGCCTG
CTGGACAAGATCCGGGGCATGCAGAAGCTGAGCACACCCCAGAAGAAGTAAGGGTCCTCG
ACCCAGGTGAATGGTGGCTCCCACAGGACAATCGCTGCCCCCCGACCTCGTAGCAACAGC
AATACGGGGGGGCCCTGCGGCCAGGCCTGGTGCCATGAGCAGGGCTCCCCGTGCCCCTGG
CCCAGGGGCCTTTTCCCTGCCCCCTCAGTTTTCCATTTTCGGGGTTTTTTATTATTATTA
AACTGATGGGACTTTTTGTGTTTTTATATTGACTGCGGCGCGGGCCCTTTAATAAAGCTA
GGCTACACCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PP14B_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               PP14B_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               397-516, - strand, RNAz p=0.640323
               

               
               541-730, - strand, RNAz p=0.981342

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-516, - strand, RNAz p=0.640323
               

               
               541-730, - strand, RNAz p=0.981342

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               58-730, gnl|bosTau2|chr19 (44203342-44204014)
               

               
               58-730, gnl|Hg17|chr4 (140394106-140393427)
               

               
               58-730, gnl|Mm7|chrX (70542495-70543183)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-730, gnl|bosTau2|chr19 (44203342-44204014)
               

               
               58-730, gnl|Hg17|chr4 (140394106-140393427)
               

               
               58-730, gnl|Mm7|chrX (70542495-70543183)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fce (1.08637)
               

               
               pla (0.534688)
               

               
               ebs (0.354904)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.08637)
               

               
               pla (0.534688)
               

               
               ebs (0.354904)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	397-516, - strand, RNAz p=0.640323
	541-730, - strand, RNAz p=0.981342

	58-730, gnl\|bosTau2\|chr19 (44203342-44204014)
	58-730, gnl\|Hg17\|chr4 (140394106-140393427)
	58-730, gnl\|Mm7\|chrX (70542495-70543183)

	fce (1.08637)
	pla (0.534688)
	ebs (0.354904)
	mas (0.210305)
	fcc (0.197785)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	nca (0.136874)
	eru (0.120048)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)