Non-Coding RNA Search

Ss1.1-Mixn-0028m15.5

Sequence:


               
               GCCGCACTGATGAAGACAGGACTGTCATGGATGGAGGCCTAGAGTCTGACGGGCCCAGCA
TGACAGAGAATGGCCTGGAAGATGAGTCAAGACCCCAGCGTCGTAATCGGAGCCGCCGCC
GCCGCAACCGTGGTAACCGGACTGATGGTTCTGTCAGTGGAGACCGTCAGCCAGTGACTG
TGGCTGACTATATCTCCCGAGCAGAGTCTCAGAGCCGCCAGCGGCCACCCCTGGAACGCA
CTAAACCTTCAGAGGATTCTCTTTCAGGACAGAAGGGTGACTCTGTCAGCAAGCTTCCTA
AGGGCCCCTCAGAGAATGGGGAGCTCTCCGCCCCCCTGGAGTTGGGTAGTTTGGTGAATG
GGGTTTCATAAACCCTCCAGCCCGCATCCCTCCCTTCTCCATCTCGCTTGCTGCCCAACA
CCATGGCCCTCACAGGCCCGACTGACCTGCGCTGGAGCTGCTCTTATCTAGGGGGGAGGG
GGGTGGCACAGCAGCTTGGGTCCCCCCCAACCTCCAGGAGCTAGTGGAGGGGTGTGTAAC
AGGGTCATACCCCCTCCCTCTTGTCCACCCTACCCCCAGGGTAAGGGGAGCCTCTCTCCT
TCCCCATCAGACTGGATGTGCCTTTATCCTCTAATGCCCCAATCTCTCTCTGAACACCCC
CATTCTCCGCCTGTTGGTGCGGGGTGCTCCTTGACCCACCCAGATGTGACAGTTCAGGGG
GGTTCCCCTGCTATCCCTACTCCCGTCCTGTACCCCCCATTTCTGGGGCCTCATCACTGT
GGAAGACGGGGATAGTAAGGGTCTAAGTGGGTGGGAGGCATGGGGAAGGTTTTGGAGTAG
AACCAGGGGTGTGTATGAAGGGGGGTGACAAGGTCCCCCAGGGGAGGGGGGACCAACCTT
GTCTGGTGGATGAGAAGGCGTATTTATTTTTCACTGTACAGTATTTAAAAAGAGAATAAA
AAAATCCAAATGGCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCACTGATGAAGACAGGACTGTCATGGATGGAGGCCTAGAGTCTGACGGGCCCAGCA
TGACAGAGAATGGCCTGGAAGATGAGTCAAGACCCCAGCGTCGTAATCGGAGCCGCCGCC
GCCGCAACCGTGGTAACCGGACTGATGGTTCTGTCAGTGGAGACCGTCAGCCAGTGACTG
TGGCTGACTATATCTCCCGAGCAGAGTCTCAGAGCCGCCAGCGGCCACCCCTGGAACGCA
CTAAACCTTCAGAGGATTCTCTTTCAGGACAGAAGGGTGACTCTGTCAGCAAGCTTCCTA
AGGGCCCCTCAGAGAATGGGGAGCTCTCCGCCCCCCTGGAGTTGGGTAGTTTGGTGAATG
GGGTTTCATAAACCCTCCAGCCCGCATCCCTCCCTTCTCCATCTCGCTTGCTGCCCAACA
CCATGGCCCTCACAGGCCCGACTGACCTGCGCTGGAGCTGCTCTTATCTAGGGGGGAGGG
GGGTGGCACAGCAGCTTGGGTCCCCCCCAACCTCCAGGAGCTAGTGGAGGGGTGTGTAAC
AGGGTCATACCCCCTCCCTCTTGTCCACCCTACCCCCAGGGTAAGGGGAGCCTCTCTCCT
TCCCCATCAGACTGGATGTGCCTTTATCCTCTAATGCCCCAATCTCTCTCTGAACACCCC
CATTCTCCGCCTGTTGGTGCGGGGTGCTCCTTGACCCACCCAGATGTGACAGTTCAGGGG
GGTTCCCCTGCTATCCCTACTCCCGTCCTGTACCCCCCATTTCTGGGGCCTCATCACTGT
GGAAGACGGGGATAGTAAGGGTCTAAGTGGGTGGGAGGCATGGGGAAGGTTTTGGAGTAG
AACCAGGGGTGTGTATGAAGGGGGGTGACAAGGTCCCCCAGGGGAGGGGGGACCAACCTT
GTCTGGTGGATGAGAAGGCGTATTTATTTTTCACTGTACAGTATTTAAAAAGAGAATAAA
AAAATCCAAATGGCAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21328299|gb|AAM48519.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21328299|gb|AAM48519.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               313-430, - strand, RNAz p=0.984421
               

               
               471-974, + strand, RNAz p=0.993677

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-430, - strand, RNAz p=0.984421
               

               
               471-974, + strand, RNAz p=0.993677

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK027742, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK027742, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               274-974, gnl|bosTau2|chr19 (13291787-13291084)
               

               
               274-974, gnl|Hg17|chr17 (7435970-7435272)
               

               
               274-974, gnl|Mm7|chr11 (69734176-69734871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               274-974, gnl|bosTau2|chr19 (13291787-13291084)
               

               
               274-974, gnl|Hg17|chr17 (7435970-7435272)
               

               
               274-974, gnl|Mm7|chr11 (69734176-69734871)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.45861)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	313-430, - strand, RNAz p=0.984421
	471-974, + strand, RNAz p=0.993677

	274-974, gnl\|bosTau2\|chr19 (13291787-13291084)
	274-974, gnl\|Hg17\|chr17 (7435970-7435272)
	274-974, gnl\|Mm7\|chr11 (69734176-69734871)

	ece (0.45861)
	fce (0.271592)
	ill (0.175593)
	ton (0.1755)
	nco (0.161734)
	csp (0.161186)
	pla (0.133672)
	eru (0.120048)
	eje (0.0988338)