Non-Coding RNA Search

Ss1.1-Mixn-0028o04.5

Sequence:


               
               CCGCGTCCCAGGCCTCGGCCCCCGCGACCCCGAGCTCGGAAGCGGCCTGCCGGCTCGGGC
AGCCGCGGGGAGGAAGAGGAGGAGGAGGAGGAGGGGGGCGCAGACGATGGGGAGGCCGAG
GAGGAGCCAGAGGAGGAGGAAGAAGAGGAGGAGGACTTGATCGATGGCTTCGCCATCGCC
AGCTTCGCCAGCCTCGAAGCCTTGCAGAAGGATGCATCTCTTCAGCCCCAAGAGCGACTG
GAGCATCGGCTAAAGCATTCTGGGAAGCGGAAGAGGGGGGGCTCCAGTGGAGCCACTGGG
GAGCCAGGGGACAGCTCTGATCGAGAGCCTGGCCGACCCTCTGGGGATCGGGCCCGAAAA
TGGCCCAATAAGCGGAGAAGGAAAGAGGCCTCCTCCCGTCATTCTCTGGAAGCTGGATAC
ATATGTGATGCAGAAAGTGATCTGGACGAGAGGGTCTCAGACGATGACCTTGACCCATCC
TTTACTGTCTCAACCAGCAAAGCCTCGGGCCCCCACGGCGCCTTCAACGGGAACTGTGAA
GCAAAACTCTCCGTGGTCCCTAAAGTGTCGGGCCTGGAGCGGAGCCAGGAGCAGCCCCCA
GGGCCCGACCCGCTGCTAGTGCCTTTCCCCCCGAAGGAACCACCGCCTCCACCAGCCCCT
CGGCCTCCCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGTCCCAGGCCTCGGCCCCCGCGACCCCGAGCTCGGAAGCGGCCTGCCGGCTCGGGC
AGCCGCGGGGAGGAAGAGGAGGAGGAGGAGGAGGGGGGCGCAGACGATGGGGAGGCCGAG
GAGGAGCCAGAGGAGGAGGAAGAAGAGGAGGAGGACTTGATCGATGGCTTCGCCATCGCC
AGCTTCGCCAGCCTCGAAGCCTTGCAGAAGGATGCATCTCTTCAGCCCCAAGAGCGACTG
GAGCATCGGCTAAAGCATTCTGGGAAGCGGAAGAGGGGGGGCTCCAGTGGAGCCACTGGG
GAGCCAGGGGACAGCTCTGATCGAGAGCCTGGCCGACCCTCTGGGGATCGGGCCCGAAAA
TGGCCCAATAAGCGGAGAAGGAAAGAGGCCTCCTCCCGTCATTCTCTGGAAGCTGGATAC
ATATGTGATGCAGAAAGTGATCTGGACGAGAGGGTCTCAGACGATGACCTTGACCCATCC
TTTACTGTCTCAACCAGCAAAGCCTCGGGCCCCCACGGCGCCTTCAACGGGAACTGTGAA
GCAAAACTCTCCGTGGTCCCTAAAGTGTCGGGCCTGGAGCGGAGCCAGGAGCAGCCCCCA
GGGCCCGACCCGCTGCTAGTGCCTTTCCCCCCGAAGGAACCACCGCCTCCACCAGCCCCT
CGGCCTCCCGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-196, - strand, RNAz p=0.96169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, - strand, RNAz p=0.96169

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-207, gnl|bosTau2|chr25 (25772821-25772615)
               

               
               1-207, gnl|Hg17|chr16 (30578590-30578799)
               

               
               1-207, gnl|Mm7|chr7 (123576000-123576203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-207, gnl|bosTau2|chr25 (25772821-25772615)
               

               
               1-207, gnl|Hg17|chr16 (30578590-30578799)
               

               
               1-207, gnl|Mm7|chr7 (123576000-123576203)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-207, gnl\|bosTau2\|chr25 (25772821-25772615)
	1-207, gnl\|Hg17\|chr16 (30578590-30578799)
	1-207, gnl\|Mm7\|chr7 (123576000-123576203)