Non-Coding RNA Search

Ss1.1-Mixn-0028o09.5

Sequence:


               
               GCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGGTGGTGGCAGGGGCGGGCGGCCATGG
CGGCGACGGAGGCCAGCGGCGACGACGTCCGCTGCGTGCGGCTGAGCGCCGAGCGGGCCC
GGACGCTGCTGGCCGACGTGGACACGCTGCTGTTCGACTGCGACGGCGTGCTGTGGCGCG
GTGAGACGGCGGTGCCCGGCGCGCCCGAGGCCCTGACGGCGCTGCGGGCCCGCGGCAAGC
GCCTCGGTTTCATTACCAACAACAGCAGCAAGACCCGCGAGGCATACGCCGAGAAGCTGC
AGCGCCTGGGCTTCGGCGGCCCGTCGGGGCCCAACGCGGGCCGCGAAATCTTCGGCACAG
CTTATTGCACCGCTCTCTACCTGCGCCAGCGCCTGGGCGGTGCGCCGACCCCCAAGGCCT
ACGTGCTAGGCAGCGCGGCCCTGGCCGCCGAGTTGGAGGCCGTGGGCGTCACCTGCGTGG
GCGTGGGACCCGAGCCCCTGCAGGGCGAAGGCCCCAGTGCCTGGCTGGACGCGCCCCTGG
AGCCCGACGTGCGCGCCGTCGTGGTGGGCTTCGACCCGCACTTCAGTTACATGAAGCTCA
CCAAGGCTGTGCGCTACCTGCAGCAGCCCAGCTGCCTGCTTGTGGGCACCAACATGGACA
ACAGACTCCCACTCGAGAACGGCCGCTTCATCGCGGGTACCGGCTGTCTGGTCCGAGCCG
TGGAGATGGCCGCCCAGCGCCAAGCAGACATCATAGGGAAACCCAGCCGCTTCATCTTTG
ACTGCGTGTCCCAGGAGTATGGCATCAACCCGGAGCGCACGGTCATGGTGGGTGATCGCC
TGGACACAGACATCCTCCTGGGCGTCACCTGTGGTCTGAAGACCGTCCTGACCCTCACCG
GAGTCTCCACTCTAGGAGACGTGAAGAGTAATCAAGAAAGTGACTGCATGTCTAGGAAGA
AAATGGTCCCTGACTTCTATGTTGACAGCATAGCCGACCTTTTGCCTGCCCTTCAAGGTT
AAAGATTTAGTGTCTTTAATCTCCAGAATAAAAAAAAAATGAAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCCGGTGGTGGCAGGGGCGGGCGGCCATGG
CGGCGACGGAGGCCAGCGGCGACGACGTCCGCTGCGTGCGGCTGAGCGCCGAGCGGGCCC
GGACGCTGCTGGCCGACGTGGACACGCTGCTGTTCGACTGCGACGGCGTGCTGTGGCGCG
GTGAGACGGCGGTGCCCGGCGCGCCCGAGGCCCTGACGGCGCTGCGGGCCCGCGGCAAGC
GCCTCGGTTTCATTACCAACAACAGCAGCAAGACCCGCGAGGCATACGCCGAGAAGCTGC
AGCGCCTGGGCTTCGGCGGCCCGTCGGGGCCCAACGCGGGCCGCGAAATCTTCGGCACAG
CTTATTGCACCGCTCTCTACCTGCGCCAGCGCCTGGGCGGTGCGCCGACCCCCAAGGCCT
ACGTGCTAGGCAGCGCGGCCCTGGCCGCCGAGTTGGAGGCCGTGGGCGTCACCTGCGTGG
GCGTGGGACCCGAGCCCCTGCAGGGCGAAGGCCCCAGTGCCTGGCTGGACGCGCCCCTGG
AGCCCGACGTGCGCGCCGTCGTGGTGGGCTTCGACCCGCACTTCAGTTACATGAAGCTCA
CCAAGGCTGTGCGCTACCTGCAGCAGCCCAGCTGCCTGCTTGTGGGCACCAACATGGACA
ACAGACTCCCACTCGAGAACGGCCGCTTCATCGCGGGTACCGGCTGTCTGGTCCGAGCCG
TGGAGATGGCCGCCCAGCGCCAAGCAGACATCATAGGGAAACCCAGCCGCTTCATCTTTG
ACTGCGTGTCCCAGGAGTATGGCATCAACCCGGAGCGCACGGTCATGGTGGGTGATCGCC
TGGACACAGACATCCTCCTGGGCGTCACCTGTGGTCTGAAGACCGTCCTGACCCTCACCG
GAGTCTCCACTCTAGGAGACGTGAAGAGTAATCAAGAAAGTGACTGCATGTCTAGGAAGA
AAATGGTCCCTGACTTCTATGTTGACAGCATAGCCGACCTTTTGCCTGCCCTTCAAGGTT
AAAGATTTAGTGTCTTTAATCTCCAGAATAAAAAAAAAATGAAAAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CHP8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CHP8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               555-674, - strand, RNAz p=0.747351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               555-674, - strand, RNAz p=0.747351

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-698, gnl|bosTau2|chr25 (5049106-5049802)
               

               
               4-698, gnl|Hg17|chr16 (2204813-2204138)
               

               
               4-698, gnl|Mm7|chr17 (22651274-22651976)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-698, gnl|bosTau2|chr25 (5049106-5049802)
               

               
               4-698, gnl|Hg17|chr16 (2204813-2204138)
               

               
               4-698, gnl|Mm7|chr17 (22651274-22651976)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               eru (0.120048)

	4-698, gnl\|bosTau2\|chr25 (5049106-5049802)
	4-698, gnl\|Hg17\|chr16 (2204813-2204138)
	4-698, gnl\|Mm7\|chr17 (22651274-22651976)