Ss1.1-Mixn-0029a08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTAGAGCAGGATGACGTCCAGAAGGACTGTGCAAAAACCACCACAAAAAACAAAAAGC AAACAAAAAAAGAAAGAAAAAGAGAGAGAAGCACCTGGGCATCTACTCCGTGTTGCCCAA CCACAAGGCTGATGCCGTGTTGAGCATGCCGTCCTCGGTGACCTCGGGCCTCCACGTGCA GCCCACCCTGGCTGTCTCCATGGACTTTAGCACCTACGGGGGTCTGCTGCCCCAGGGCTT CATCCAGAGGGAGCTATTCAGCAAGCTGGGGGAGCTGGCCGTGGGCATGAAGTCGGAGAG TCGCAGCGTCGGGGAGCAGTGCAGCGTGTGCGGGGTGGAGCTTCCTGACAACGAGGCAGT GGAGCAGCACAGGAAGCTGCACAGTGGGATGAAGACGTACGGGTGTGAGCTCTGCGGAAA GCGGTTCCTGGATAGTTTGCGACTGAGAATGCACTTACTGGCTCATTCAGCGGGTGCCAA AGCCTTTGTCTGTGATCAGTGCGGTGCCCAGTTTTCGAAGGAGGATGCCCTGGAGACACA CAGGCAGACCCATACCGGCACGGACATGGCTGTCTTCTGTCTGCTGTGCGGGAAGCGTTT CCAGGCCCAGAGCGCGCTCCAGCAGCACATGGAAGTCCACGCGGGCGTACGCAGCTACAT CTGCAGCGAGTGCAACCGCACCTTCCCCAGCCACACCGCCCTCAAACGCCACCTGCGCTC ACATACAGGTGACCACCCGTATGAGTGTGAGTTCTGTGGCAGCTGCTTCCGGGATGAGAG CACACTCAAGAGCCACAAGCGCATCCACACGGGCGAGAAACCCTACGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTAGAGCAGGATGACGTCCAGAAGGACTGTGCAAAAACCACCACAAAAAACAAAAAGC AAACAAAAAAAGAAAGAAAAAGAGAGAGAAGCACCTGGGCATCTACTCCGTGTTGCCCAA CCACAAGGCTGATGCCGTGTTGAGCATGCCGTCCTCGGTGACCTCGGGCCTCCACGTGCA GCCCACCCTGGCTGTCTCCATGGACTTTAGCACCTACGGGGGTCTGCTGCCCCAGGGCTT CATCCAGAGGGAGCTATTCAGCAAGCTGGGGGAGCTGGCCGTGGGCATGAAGTCGGAGAG TCGCAGCGTCGGGGAGCAGTGCAGCGTGTGCGGGGTGGAGCTTCCTGACAACGAGGCAGT GGAGCAGCACAGGAAGCTGCACAGTGGGATGAAGACGTACGGGTGTGAGCTCTGCGGAAA GCGGTTCCTGGATAGTTTGCGACTGAGAATGCACTTACTGGCTCATTCAGCGGGTGCCAA AGCCTTTGTCTGTGATCAGTGCGGTGCCCAGTTTTCGAAGGAGGATGCCCTGGAGACACA CAGGCAGACCCATACCGGCACGGACATGGCTGTCTTCTGTCTGCTGTGCGGGAAGCGTTT CCAGGCCCAGAGCGCGCTCCAGCAGCACATGGAAGTCCACGCGGGCGTACGCAGCTACAT CTGCAGCGAGTGCAACCGCACCTTCCCCAGCCACACCGCCCTCAAACGCCACCTGCGCTC ACATACAGGTGACCACCCGTATGAGTGTGAGTTCTGTGGCAGCTGCTTCCGGGATGAGAG CACACTCAAGAGCCACAAGCGCATCCACACGGGCGAGAAACCCTACGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 628-730, - strand, RNAz p=0.534911 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 628-730, - strand, RNAz p=0.534911 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 86-376, gnl|bosTau2|chr15 (11095558-11095268) | |
| 86-376, gnl|canFam2|chr5 (22275791-22275232) | |
| 86-376, gnl|danRer3|chr15 (10713928-10713402) | |
| 86-376, gnl|echTel1|scaffold_313422 (62306-62865) | |
| 86-376, gnl|fr1|chrUn (7675706-7676256) | |
| 86-376, gnl|galGal2|chr24 (4407745-4407201) | |
| 86-376, gnl|hg17|chr11 (113439949-113440508) | |
| 86-376, gnl|Hg17|chr11 (113440214-113440504) | |
| 86-376, gnl|loxAfr1|scaffold_21337 (78039-78599) | |
| 86-376, gnl|mm7|chr9 (48804289-48803730) | |
| 86-376, gnl|Mm7|chr9 (48804022-48803732) | |
| 86-376, gnl|monDom2|scaffold_2 (126805005-126804443) | |
| 86-376, gnl|oryCun1|scaffold_199188 (6950-6391) | |
| 86-376, gnl|panTro1|chr9 (115445862-115446421) | |
| 86-376, gnl|rheMac2|chr14 (112544139-112544698) | |
| 86-376, gnl|rn3|chr8 (52110021-52109462) | |
| 86-376, gnl|tetNig1|chrUn_random (29483078-29482534) | |
| 86-376, gnl|xenTro1|scaffold_300 (235760-236304) | |
| 557-730, gnl|bosTau2|chr15 (10910584-10910411) | |
| 557-730, gnl|canFam2|chr5 (22105214-22104975) | |
| 557-730, gnl|danRer3|chr21 (16185361-16185184) | |
| 557-730, gnl|dasNov1|scaffold_32407 (3986-3750) | |
| 557-730, gnl|echTel1|scaffold_297057 (3067-2835) | |
| 557-730, gnl|fr1|chrUn (7738716-7738927) | |
| 557-730, gnl|galGal2|chr24 (4345892-4345652) | |
| 557-730, gnl|hg17|chr11 (113618061-113618300) | |
| 557-730, gnl|Hg17|chr11 (113618098-113618271) | |
| 557-730, gnl|loxAfr1|scaffold_21465 (15001-14765) | |
| 557-730, gnl|mm7|chr9 (48637539-48637301) | |
| 557-730, gnl|Mm7|chr9 (48637500-48637327) | |
| 557-730, gnl|monDom2|scaffold_2 (126579473-126579263) | |
| 557-730, gnl|oryCun1|scaffold_198874 (148023-148259) | |
| 557-730, gnl|panTro1|chr9 (115624717-115624956) | |
| 557-730, gnl|rheMac2|chr14 (112723883-112724121) | |
| 557-730, gnl|rn3|chr8 (51959098-51958861) | |
| 557-730, gnl|tetNig1|chrUn_random (29428411-29428224) | |
| 557-730, gnl|xenTro1|scaffold_300 (304650-304849) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-376, gnl|bosTau2|chr15 (11095558-11095268) | |
| 86-376, gnl|canFam2|chr5 (22275791-22275232) | |
| 86-376, gnl|danRer3|chr15 (10713928-10713402) | |
| 86-376, gnl|echTel1|scaffold_313422 (62306-62865) | |
| 86-376, gnl|fr1|chrUn (7675706-7676256) | |
| 86-376, gnl|galGal2|chr24 (4407745-4407201) | |
| 86-376, gnl|hg17|chr11 (113439949-113440508) | |
| 86-376, gnl|Hg17|chr11 (113440214-113440504) | |
| 86-376, gnl|loxAfr1|scaffold_21337 (78039-78599) | |
| 86-376, gnl|mm7|chr9 (48804289-48803730) | |
| 86-376, gnl|Mm7|chr9 (48804022-48803732) | |
| 86-376, gnl|monDom2|scaffold_2 (126805005-126804443) | |
| 86-376, gnl|oryCun1|scaffold_199188 (6950-6391) | |
| 86-376, gnl|panTro1|chr9 (115445862-115446421) | |
| 86-376, gnl|rheMac2|chr14 (112544139-112544698) | |
| 86-376, gnl|rn3|chr8 (52110021-52109462) | |
| 86-376, gnl|tetNig1|chrUn_random (29483078-29482534) | |
| 86-376, gnl|xenTro1|scaffold_300 (235760-236304) | |
| 557-730, gnl|bosTau2|chr15 (10910584-10910411) | |
| 557-730, gnl|canFam2|chr5 (22105214-22104975) | |
| 557-730, gnl|danRer3|chr21 (16185361-16185184) | |
| 557-730, gnl|dasNov1|scaffold_32407 (3986-3750) | |
| 557-730, gnl|echTel1|scaffold_297057 (3067-2835) | |
| 557-730, gnl|fr1|chrUn (7738716-7738927) | |
| 557-730, gnl|galGal2|chr24 (4345892-4345652) | |
| 557-730, gnl|hg17|chr11 (113618061-113618300) | |
| 557-730, gnl|Hg17|chr11 (113618098-113618271) | |
| 557-730, gnl|loxAfr1|scaffold_21465 (15001-14765) | |
| 557-730, gnl|mm7|chr9 (48637539-48637301) | |
| 557-730, gnl|Mm7|chr9 (48637500-48637327) | |
| 557-730, gnl|monDom2|scaffold_2 (126579473-126579263) | |
| 557-730, gnl|oryCun1|scaffold_198874 (148023-148259) | |
| 557-730, gnl|panTro1|chr9 (115624717-115624956) | |
| 557-730, gnl|rheMac2|chr14 (112723883-112724121) | |
| 557-730, gnl|rn3|chr8 (51959098-51958861) | |
| 557-730, gnl|tetNig1|chrUn_random (29428411-29428224) | |
| 557-730, gnl|xenTro1|scaffold_300 (304650-304849) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| hlv (0.139256) |