Non-Coding RNA Search

Ss1.1-Mixn-0029e05.5

Sequence:


               
               AAAAGTACAAGATATGTTCAAAGCTTTCCTAATTTTCTTATTGGTAGCCACATAAGTTTC
AAAAACAACATGGCACATAGAACTAACAATGGGGAAAAATTTGTTTCTGTTTGAAAAGTG
TGTTTAGCATTTTGGGTTGCCATATCAGTTTATAAATTTGGTGCTCTGCTAATTACACTT
TATCTAGAGAAGCAAGTTAATGGAGTTTGAACCCTCCGCCTTGATGTGTAGTGGAGGATA
ATTCTGTAGAAGAATGTCAGCCAGTATGGTGAAGTCATTCTACTCTTCTTAATTTAGTTT
TATATTAAAGGACAGTGTTTGGTGTTTGGAGCCAGAGGCTTTATGATTACAGGTCTGAAA
TAAGGTTGACTTGTGTGTTATTTTTCATCTCTGTCCTGTTTCCAGGTATGTTTCCAAGTT
TATATCTTCCCAGTATTTACAAAAACATGTTTGCATTGAGAAATCAGTCATAGAGAGTTT
TTACCCAGGGGAGAGTCATCCTCCAGTACCATTGTAATTAAAGCCTATCTAGTTATTGTA
AATATTTACCTGTCATTTTTGACAGGTTGGGGCCAGCTTCATGTTTTAAATCTTTACCCC
AGTGTGAAAACTTAAAAGGTTTATTCACTTTTTTACCATTTTATTGAAAATAATTCAAAT
CTGTTTTTAAAGTTTTTTTGGTAACCTGTGCCATGAAATTTGAAAACCATCAAAAACTCA
AGGGAAATTTTGTATTCAGTTCCTTTTCTGGTTTAATGTTAAGTTGTATAGATTATTAAT
GCATGTCCACTGAATATAACCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTACAAGATATGTTCAAAGCTTTCCTAATTTTCTTATTGGTAGCCACATAAGTTTC
AAAAACAACATGGCACATAGAACTAACAATGGGGAAAAATTTGTTTCTGTTTGAAAAGTG
TGTTTAGCATTTTGGGTTGCCATATCAGTTTATAAATTTGGTGCTCTGCTAATTACACTT
TATCTAGAGAAGCAAGTTAATGGAGTTTGAACCCTCCGCCTTGATGTGTAGTGGAGGATA
ATTCTGTAGAAGAATGTCAGCCAGTATGGTGAAGTCATTCTACTCTTCTTAATTTAGTTT
TATATTAAAGGACAGTGTTTGGTGTTTGGAGCCAGAGGCTTTATGATTACAGGTCTGAAA
TAAGGTTGACTTGTGTGTTATTTTTCATCTCTGTCCTGTTTCCAGGTATGTTTCCAAGTT
TATATCTTCCCAGTATTTACAAAAACATGTTTGCATTGAGAAATCAGTCATAGAGAGTTT
TTACCCAGGGGAGAGTCATCCTCCAGTACCATTGTAATTAAAGCCTATCTAGTTATTGTA
AATATTTACCTGTCATTTTTGACAGGTTGGGGCCAGCTTCATGTTTTAAATCTTTACCCC
AGTGTGAAAACTTAAAAGGTTTATTCACTTTTTTACCATTTTATTGAAAATAATTCAAAT
CTGTTTTTAAAGTTTTTTTGGTAACCTGTGCCATGAAATTTGAAAACCATCAAAAACTCA
AGGGAAATTTTGTATTCAGTTCCTTTTCTGGTTTAATGTTAAGTTGTATAGATTATTAAT
GCATGTCCACTGAATATAACCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               473-630, - strand, RNAz p=0.969668

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               473-630, - strand, RNAz p=0.969668

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               500-616, HUMGS01116 Human promyelocyte Homo sapiens cDNA clone pm1771 3', 
(dbj|D20143.1|), blast E-value=2e-25, identity=88.03% 
               

               
               500-616, zr64g02.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AA242887.1|), blast E-value=3e-27, identity=88.89% 
               

               
               500-615, 602130436F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE (gb|BF698118.1|), 
blast E-value=1e-26, identity=88.79% 
               

               
               500-616, UI-H-EI1-ayx-c-03-0-UI.s1 NCI_CGAP_EI1 Homo sapiens cDNA clone 
(gb|BQ002962.1|), blast E-value=3e-27, identity=88.89% 
               

               
               500-616, MMPL0008_B05 MMPL Macaca mulatta cDNA, mRNA sequence (gb|CB548575.1|), 
blast E-value=3e-27, identity=88.89% 
               

               
               500-619, 1183479 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN283284.1|), 
blast E-value=2e-22, identity=87.6%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               500-616, HUMGS01116 Human promyelocyte Homo sapiens cDNA clone pm1771 3', 
(dbj|D20143.1|), blast E-value=2e-25, identity=88.03% 
               

               
               500-616, zr64g02.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AA242887.1|), blast E-value=3e-27, identity=88.89% 
               

               
               500-615, 602130436F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE (gb|BF698118.1|), 
blast E-value=1e-26, identity=88.79% 
               

               
               500-616, UI-H-EI1-ayx-c-03-0-UI.s1 NCI_CGAP_EI1 Homo sapiens cDNA clone 
(gb|BQ002962.1|), blast E-value=3e-27, identity=88.89% 
               

               
               500-616, MMPL0008_B05 MMPL Macaca mulatta cDNA, mRNA sequence (gb|CB548575.1|), 
blast E-value=3e-27, identity=88.89% 
               

               
               500-619, 1183479 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN283284.1|), 
blast E-value=2e-22, identity=87.6%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr16 (48633099-48632288)
               

               
               1-804, gnl|Hg17|chr1 (181801970-181802769)
               

               
               1-804, gnl|Mm7|chr1 (151403447-151402695)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr16 (48633099-48632288)
               

               
               1-804, gnl|Hg17|chr1 (181801970-181802769)
               

               
               1-804, gnl|Mm7|chr1 (151403447-151402695)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

	500-616, HUMGS01116 Human promyelocyte Homo sapiens cDNA clone pm1771 3', (dbj\|D20143.1\|), blast E-value=2e-25, identity=88.03%
	500-616, zr64g02.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE (gb\|AA242887.1\|), blast E-value=3e-27, identity=88.89%
	500-615, 602130436F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE (gb\|BF698118.1\|), blast E-value=1e-26, identity=88.79%
	500-616, UI-H-EI1-ayx-c-03-0-UI.s1 NCI_CGAP_EI1 Homo sapiens cDNA clone (gb\|BQ002962.1\|), blast E-value=3e-27, identity=88.89%
	500-616, MMPL0008_B05 MMPL Macaca mulatta cDNA, mRNA sequence (gb\|CB548575.1\|), blast E-value=3e-27, identity=88.89%
	500-619, 1183479 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN283284.1\|), blast E-value=2e-22, identity=87.6%

	1-804, gnl\|bosTau2\|chr16 (48633099-48632288)
	1-804, gnl\|Hg17\|chr1 (181801970-181802769)
	1-804, gnl\|Mm7\|chr1 (151403447-151402695)