Non-Coding RNA Search

Ss1.1-Mixn-0029f23.5

Sequence:


               
               CGGGCTGGGTCGAGGCGTTTTGTTTTGTTCGGTTTTGTTTTGCGAGAGCGCGAGAGAGGC
GGTCGCCGAGCCCCGGGAGGAAGATGTCAAACGTGAGAGTGTCTAACGGGAGCCCGAGCC
TGGAGCGGATGGACGCCAGACAGGCGGAGTACCCCAAGCCCTCGGCCTGCCGAAACCTCT
TCGGCCCGGTCAATCACGAAGAGTTAACCCGGGACTTGGAGAAGCACTGCAGAGACATGG
AAGAGGCCAGCCAGCGCAAGTGGAATTTTGATTTTCAGAATCACAAGCCCCTGGAGGGCA
AATACGAGTGGCAGGAGGTGGAAAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGC
GGCCACCCAAAGGCGCCTGCAAGGTGCCGGCGCAGGAGGGCCAGGGTGTCAGCGGGACCC
GCCAGGCGGTGCCTTTAATTGGGTCTCAGGCCAACTCAGAGGACACACATTTGGTAGACC
AAAAGACTGATGCACCGGACAGCCAGACGGGGTTAGCGGAGCAGTGCACTGGGATAAGGA
AGCGACCTGCCACAGACGATTCCTCTCCTCAAAACAAAAGAGCCAACAGAACAGAAGAAA
ATGTTTCAGACGGTTCCCCGAACTCGGCTTCAGTGGAGCAGACGCCCAAGAAGCCCGGCC
TCAGAAGGCGTCAAACGTAAACTGCTCGTATTAAGAGTATGTTTCCTTGTTGATCAGATA
CATCACCGCTTGATGAAAGCAGGAAGATAATAAATAAAAAATTTTAGTGCATATCTGACT
CCATGNAAGGGACAACCCGTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGGGTCGAGGCGTTTTGTTTTGTTCGGTTTTGTTTTGCGAGAGCGCGAGAGAGGC
GGTCGCCGAGCCCCGGGAGGAAGATGTCAAACGTGAGAGTGTCTAACGGGAGCCCGAGCC
TGGAGCGGATGGACGCCAGACAGGCGGAGTACCCCAAGCCCTCGGCCTGCCGAAACCTCT
TCGGCCCGGTCAATCACGAAGAGTTAACCCGGGACTTGGAGAAGCACTGCAGAGACATGG
AAGAGGCCAGCCAGCGCAAGTGGAATTTTGATTTTCAGAATCACAAGCCCCTGGAGGGCA
AATACGAGTGGCAGGAGGTGGAAAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGC
GGCCACCCAAAGGCGCCTGCAAGGTGCCGGCGCAGGAGGGCCAGGGTGTCAGCGGGACCC
GCCAGGCGGTGCCTTTAATTGGGTCTCAGGCCAACTCAGAGGACACACATTTGGTAGACC
AAAAGACTGATGCACCGGACAGCCAGACGGGGTTAGCGGAGCAGTGCACTGGGATAAGGA
AGCGACCTGCCACAGACGATTCCTCTCCTCAAAACAAAAGAGCCAACAGAACAGAAGAAA
ATGTTTCAGACGGTTCCCCGAACTCGGCTTCAGTGGAGCAGACGCCCAAGAAGCCCGGCC
TCAGAAGGCGTCAAACGTAAACTGCTCGTATTAAGAGTATGTTTCCTTGTTGATCAGATA
CATCACCGCTTGATGAAAGCAGGAAGATAATAAATAAAAAATTTTAGTGCATATCTGACT
CCATGNAAGGGACAACCCGTATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523690|ref|NP_999481.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523690|ref|NP_999481.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-390, - strand, RNAz p=0.524743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-390, - strand, RNAz p=0.524743

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               71-556, gnl|bosTau2|chr5 (57820199-57819714)
               

               
               71-556, gnl|Hg17|chr12 (12762032-12762513)
               

               
               71-556, gnl|Mm7|chr6 (134935234-134935714)
               


               
               558-688, gnl|bosTau2|chr5 (57819155-57819025)
               

               
               558-688, gnl|Hg17|chr12 (12763025-12763155)
               

               
               558-688, gnl|Mm7|chr6 (134936277-134936405)
               


               
               692-804, gnl|bosTau2|chr5 (57816864-57816751)
               

               
               692-804, gnl|Hg17|chr12 (12765240-12765355)
               

               
               692-804, gnl|Mm7|chr6 (134938568-134938680)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-556, gnl|bosTau2|chr5 (57820199-57819714)
               

               
               71-556, gnl|Hg17|chr12 (12762032-12762513)
               

               
               71-556, gnl|Mm7|chr6 (134935234-134935714)
               


               
               558-688, gnl|bosTau2|chr5 (57819155-57819025)
               

               
               558-688, gnl|Hg17|chr12 (12763025-12763155)
               

               
               558-688, gnl|Mm7|chr6 (134936277-134936405)
               


               
               692-804, gnl|bosTau2|chr5 (57816864-57816751)
               

               
               692-804, gnl|Hg17|chr12 (12765240-12765355)
               

               
               692-804, gnl|Mm7|chr6 (134938568-134938680)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	71-556, gnl\|bosTau2\|chr5 (57820199-57819714)
	71-556, gnl\|Hg17\|chr12 (12762032-12762513)
	71-556, gnl\|Mm7\|chr6 (134935234-134935714)

	558-688, gnl\|bosTau2\|chr5 (57819155-57819025)
	558-688, gnl\|Hg17\|chr12 (12763025-12763155)
	558-688, gnl\|Mm7\|chr6 (134936277-134936405)

	692-804, gnl\|bosTau2\|chr5 (57816864-57816751)
	692-804, gnl\|Hg17\|chr12 (12765240-12765355)
	692-804, gnl\|Mm7\|chr6 (134938568-134938680)