Ss1.1-Mixn-0029i07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCCACACGGGGCCTGTCAACGTGGTGGAGTTCCACCCCAATGAGTACCTCCTGGCTT CTGGCAGCTCAGACAGGACCATCCGCTTCTGGGATCTGGAGAAATTCCAGGTGGTGAGCT GCATCGAAGGGGAGCCGGGGCCTGTCAGGAGTGTCCTCTTCAACCCCGATGGCTGCTGCC TGTACAGCGGCTGCCAGGACTCCCTGCGTGTCTACGGCTGGGAGCCCGAGCGCTGCTTTG ACGTGGTCCTCGTCAACTGGGGCAAGGTGGCCGACCTGGCCATCTGCAACGACCAGCTGA TAGGTGTGGCCTTCTCCCAGAGCAACGTCTCCTCTTACGTGGTGGACCTGACGTGGGTCA CCAGGACAGGCACGGTGGCCCAGGACCCCGTGCAGGACAGCCGGCCCCTGGCGCAGCAGC CGCCCCACCCCAGTGCCCCGCTTCGGCGCATCTATGAGCGGCCCAGCACAGCCTGCAGCA AGCCTCAGAGGGTGAAGCAGAACTCGGAGAGCGAGCGCCGCAGCCCCAGCAGCGAGGACG ACCGGGACGAGCGCGAGTCTCGGGCCGAGATCCAGAACACCGAGGATTACAACGAGATCT TCCAGCCCAAGAACAGCATCAGTCGGACACCACCCCGAAGAAGTGAGCCCTTCCCAGCAC CCCCGGAGGACGACATGGCCACAGCCAAGGAGGCAGCAAAGCCCAGCCCAGCCACAGACA TGCAGTTCCCGGTGCCAAATCTCGAGGTCCTGCCCGGGCCCCCCACTGTCGTCACTTCCA CCCCCGCACCCAAGGCCGAGCCTGCCATCATCCCTGCCACCCGGAATGAGCCCATCGGGC TGAAGGCCTCCGACTTCCTGCCCGCCGTGAAGATCCCCCAGCAGGTGGAGCTGCTTGACG AGGATGCCATGTCCCAGATCCGCAAAGGCCACGACACCATGTGTGTCGTGCTCACCAGCC GCCACAAGAACCTGGATACTGTGTGGGCCGCGTGGACCACAGGCGACATCAAGACATCGG TGGACTCCGCCGTGGCCATCAACGACCTGTCGGTGGTAGTCGACCTCCTCAACATTGTCA ACCAGAAGGCCTCCCTGTGGAAGCTGGACCTGTGCACCACCATCCTGCCGCAGATCGAGA AGCTTCTGAAGAGCAAGTATGAGAGCTACGTCCAGACGGGCTGCACCTCCCTGAAGCTGA TCCTGAAGCGGTTTCTGCCCCTGATCACTGACATGCTGGCGGCCCCGCCCTCCGTGGGTG TGGACATCAGCCGGGAGGAGAGGCTGCACAAGTGCCGGCTCTGCTACAAGCAGCTCAAGA GCATCAGCGGCTTTGTTAAAAGCAAGTCGAGCTTGAGCGGCCGCCATGGCAGTGCCTTCC GGGAGCTGCACCTGCTCATGGCCAGCTTGGACTGAGGAGCCCAGAGGGTGGGGGCACGGG CAGCCCTCAGGCCTGGCCTCGGCCCCTGCTCCTGTTCCCTGTGTGCCCACCGGCCCATGA GCCTCTGCTCGGCCCCCGCTGTTGCCCTGCGGCCATCCTGGAGGCGGCGCTGGCCCACTG GCCACCTCCACAGCCCTGACCTCTGAGACAGCTTCTCTCCAGGAGCAGGTGTCCAGCTTT GCCCAACTTCTGCTTCATGGGGCAGCAAACTGAGCCCTGAGGCTGCTGCTGTAATTTATG AAGGTGAATCTTATTAAATTTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCCACACGGGGCCTGTCAACGTGGTGGAGTTCCACCCCAATGAGTACCTCCTGGCTT CTGGCAGCTCAGACAGGACCATCCGCTTCTGGGATCTGGAGAAATTCCAGGTGGTGAGCT GCATCGAAGGGGAGCCGGGGCCTGTCAGGAGTGTCCTCTTCAACCCCGATGGCTGCTGCC TGTACAGCGGCTGCCAGGACTCCCTGCGTGTCTACGGCTGGGAGCCCGAGCGCTGCTTTG ACGTGGTCCTCGTCAACTGGGGCAAGGTGGCCGACCTGGCCATCTGCAACGACCAGCTGA TAGGTGTGGCCTTCTCCCAGAGCAACGTCTCCTCTTACGTGGTGGACCTGACGTGGGTCA CCAGGACAGGCACGGTGGCCCAGGACCCCGTGCAGGACAGCCGGCCCCTGGCGCAGCAGC CGCCCCACCCCAGTGCCCCGCTTCGGCGCATCTATGAGCGGCCCAGCACAGCCTGCAGCA AGCCTCAGAGGGTGAAGCAGAACTCGGAGAGCGAGCGCCGCAGCCCCAGCAGCGAGGACG ACCGGGACGAGCGCGAGTCTCGGGCCGAGATCCAGAACACCGAGGATTACAACGAGATCT TCCAGCCCAAGAACAGCATCAGTCGGACACCACCCCGAAGAAGTGAGCCCTTCCCAGCAC CCCCGGAGGACGACATGGCCACAGCCAAGGAGGCAGCAAAGCCCAGCCCAGCCACAGACA TGCAGTTCCCGGTGCCAAATCTCGAGGTCCTGCCCGGGCCCCCCACTGTCGTCACTTCCA CCCCCGCACCCAAGGCCGAGCCTGCCATCATCCCTGCCACCCGGAATGAGCCCATCGGGC TGAAGGCCTCCGACTTCCTGCCCGCCGTGAAGATCCCCCAGCAGGTGGAGCTGCTTGACG AGGATGCCATGTCCCAGATCCGCAAAGGCCACGACACCATGTGTGTCGTGCTCACCAGCC GCCACAAGAACCTGGATACTGTGTGGGCCGCGTGGACCACAGGCGACATCAAGACATCGG TGGACTCCGCCGTGGCCATCAACGACCTGTCGGTGGTAGTCGACCTCCTCAACATTGTCA ACCAGAAGGCCTCCCTGTGGAAGCTGGACCTGTGCACCACCATCCTGCCGCAGATCGAGA AGCTTCTGAAGAGCAAGTATGAGAGCTACGTCCAGACGGGCTGCACCTCCCTGAAGCTGA TCCTGAAGCGGTTTCTGCCCCTGATCACTGACATGCTGGCGGCCCCGCCCTCCGTGGGTG TGGACATCAGCCGGGAGGAGAGGCTGCACAAGTGCCGGCTCTGCTACAAGCAGCTCAAGA GCATCAGCGGCTTTGTTAAAAGCAAGTCGAGCTTGAGCGGCCGCCATGGCAGTGCCTTCC GGGAGCTGCACCTGCTCATGGCCAGCTTGGACTGAGGAGCCCAGAGGGTGGGGGCACGGG CAGCCCTCAGGCCTGGCCTCGGCCCCTGCTCCTGTTCCCTGTGTGCCCACCGGCCCATGA GCCTCTGCTCGGCCCCCGCTGTTGCCCTGCGGCCATCCTGGAGGCGGCGCTGGCCCACTG GCCACCTCCACAGCCCTGACCTCTGAGACAGCTTCTCTCCAGGAGCAGGTGTCCAGCTTT GCCCAACTTCTGCTTCATGGGGCAGCAAACTGAGCCCTGAGGCTGCTGCTGTAATTTATG AAGGTGAATCTTATTAAATTTGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1400-1516, - strand, RNAz p=0.861692 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1400-1516, - strand, RNAz p=0.861692 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 293-491, gnl|bosTau2|chr18 (22660054-22660252) | |
| 293-491, gnl|Hg17|chr16 (56344483-56344681) | |
| 293-491, gnl|Mm7|chr8 (93684643-93684841) | |
| 741-862, gnl|bosTau2|chr18 (22662057-22662175) | |
| 741-862, gnl|canFam2|chr2 (61616636-61616507) | |
| 741-862, gnl|danRer3|chr7 (43181638-43181739) | |
| 741-862, gnl|fr1|chrUn (105515526-105515397) | |
| 741-862, gnl|galGal2|chr11 (467056-466927) | |
| 741-862, gnl|hg17|chr16 (56346530-56346659) | |
| 741-862, gnl|Hg17|chr16 (56346532-56346650) | |
| 741-862, gnl|loxAfr1|scaffold_49668 (14197-14326) | |
| 741-862, gnl|mm7|chr8 (93686441-93686570) | |
| 741-862, gnl|Mm7|chr8 (93686443-93686561) | |
| 741-862, gnl|monDom2|scaffold_63 (7303702-7303810) | |
| 741-862, gnl|oryCun1|scaffold_132752 (4327-4198) | |
| 741-862, gnl|panTro1|chr18 (50460230-50460359) | |
| 741-862, gnl|rheMac2|chr20 (56109500-56109629) | |
| 741-862, gnl|rn3|chr19 (10361771-10361642) | |
| 741-862, gnl|tetNig1|chrUn_random (6383172-6383301) | |
| 864-1016, gnl|bosTau2|chr18 (22662268-22662420) | |
| 864-1016, gnl|Hg17|chr16 (56346758-56346910) | |
| 864-1016, gnl|Mm7|chr8 (93686659-93686811) | |
| 1281-1674, gnl|bosTau2|chr18 (22663547-22663934) | |
| 1281-1674, gnl|Hg17|chr16 (56348225-56348622) | |
| 1281-1674, gnl|Mm7|chr8 (93687696-93688064) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 293-491, gnl|bosTau2|chr18 (22660054-22660252) | |
| 293-491, gnl|Hg17|chr16 (56344483-56344681) | |
| 293-491, gnl|Mm7|chr8 (93684643-93684841) | |
| 741-862, gnl|bosTau2|chr18 (22662057-22662175) | |
| 741-862, gnl|canFam2|chr2 (61616636-61616507) | |
| 741-862, gnl|danRer3|chr7 (43181638-43181739) | |
| 741-862, gnl|fr1|chrUn (105515526-105515397) | |
| 741-862, gnl|galGal2|chr11 (467056-466927) | |
| 741-862, gnl|hg17|chr16 (56346530-56346659) | |
| 741-862, gnl|Hg17|chr16 (56346532-56346650) | |
| 741-862, gnl|loxAfr1|scaffold_49668 (14197-14326) | |
| 741-862, gnl|mm7|chr8 (93686441-93686570) | |
| 741-862, gnl|Mm7|chr8 (93686443-93686561) | |
| 741-862, gnl|monDom2|scaffold_63 (7303702-7303810) | |
| 741-862, gnl|oryCun1|scaffold_132752 (4327-4198) | |
| 741-862, gnl|panTro1|chr18 (50460230-50460359) | |
| 741-862, gnl|rheMac2|chr20 (56109500-56109629) | |
| 741-862, gnl|rn3|chr19 (10361771-10361642) | |
| 741-862, gnl|tetNig1|chrUn_random (6383172-6383301) | |
| 864-1016, gnl|bosTau2|chr18 (22662268-22662420) | |
| 864-1016, gnl|Hg17|chr16 (56346758-56346910) | |
| 864-1016, gnl|Mm7|chr8 (93686659-93686811) | |
| 1281-1674, gnl|bosTau2|chr18 (22663547-22663934) | |
| 1281-1674, gnl|Hg17|chr16 (56348225-56348622) | |
| 1281-1674, gnl|Mm7|chr8 (93687696-93688064) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fce (0.271592) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fce (0.271592) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) |